RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 WASHC1A8K0Z3 465 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 UPK1AO00322 258 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 FMO6PO60774 539 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 MRPS14O60783 128 aaKnown RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 PNMTP11086 282 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 MYF6P23409 242 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 PPICP45877 212 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 TUBA4AP68366 448 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 DUSP8Q13202 625 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 RNF113BQ8IZP6 322 aaKnown RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 ZNF285Q96NJ3 590 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 LMF2Q9BU23 707 aaKnown RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 FAM117AQ9C073 453 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 TOR3AQ9H497 397 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 MKLN1Q9UL63 735 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 PTRH2Q9Y3E5 179 aaKnown RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 ZFC3H1O60293 1989 aaKnown RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 CYR61O00622 381 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 B3GALT4O96024 378 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 HOXB3P14651 431 aaPredicted RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 MYL12AP19105 171 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 MAGEA2P43356 314 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 OR1E2P47887 323 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 PPP1CAP62136 330 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 MEDAGQ5VYS4 303 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 FAM180BQ6P0A1 224 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 C6orf15Q6UXA7 325 aaPredicted RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 GALNT5Q7Z7M9 940 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 FCGR1BQ92637 280 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 RORBQ92753 470 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 HDAC2Q92769 488 aaKnown RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 PTGES2Q9H7Z7 377 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 ITGB1BP2Q9UKP3 347 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 LOXL2Q9Y4K0 774 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 MFN2O95140 757 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 ANGPTL1O95841 491 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 GUSBP08236 651 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 SAGP10523 405 aaPredicted RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 FOLR1P15328 257 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 FAAH2Q6GMR7 532 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 ZNF544Q6NX49 715 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 FIGNL1Q6PIW4 674 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 CHDHQ8NE62 594 aaPredicted RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 PLPP5Q8NEB5 264 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 NRG4Q8WWG1 115 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 C16orf58Q96GQ5 468 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 SLC41A3Q96GZ6 507 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 C10orf90Q96M02 699 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 LHX9Q9NQ69 397 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 GPATCH2Q9NW75 528 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 PADI1Q9ULC6 663 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 ERVK-11Q9UQG0 969 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 PLXNB3Q9ULL4 1909 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 EFCAB10A6NFE3 127 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 FRG2CA6NGY1 282 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 CPSF4LA6NMK7 179 aaKnown RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 RIIAD1A6NNX1 92 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 FAM227AF5H4B4 570 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 SOCS2O14508 198 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 HCN1O60741 890 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 SMNDC1O75940 238 aaKnown RBP eCLIP7.8□□□□□ -1.16
USP54-215ENST00000497106 NKX2-2O95096 273 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 CXCR1P25024 350 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 HTR3AP46098 478 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 PRICKLE4Q2TBC4 344 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 LCN1P1Q5VSP4 162 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 RTL4Q6ZR62 310 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 SLC5A8Q8N695 610 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 AMER3Q8N944 861 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 C9orf43Q8TAL5 461 aaPredicted RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 STT3BQ8TCJ2 826 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 GTPBP3Q969Y2 492 aaKnown RBP7.8□□□□□ -1.16
USP54-215ENST00000497106 TAPBPLQ9BX59 468 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 PISDQ9UG56 409 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 KCND3Q9UK17 655 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 USP22Q9UPT9 525 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 ATG2BQ96BY7 2078 aa7.8□□□□□ -1.16
USP54-215ENST00000497106 IGHV5-10-1A0A0J9YXX1 117 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 TNFRSF10AO00220 468 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 NDUFB5O43674 189 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 SERPINB10P48595 397 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 MASP1P48740 699 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 GABARAPL2P60520 117 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 MVKQ03426 396 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 CHRNEQ04844 493 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 BLMHQ13867 455 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 C5orf46Q6UWT4 87 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 SENP5Q96HI0 755 aaPredicted RBP7.79□□□□□ -1.16
USP54-215ENST00000497106 ZNF681Q96N22 645 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 METTL7AQ9H8H3 244 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 KLRF1Q9NZS2 232 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 PCDHGA1Q9Y5H4 931 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 AGRPO00253 132 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 LGI1O95970 557 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ZNF806P0C7X5 589 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 UBL4AP11441 157 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 ATP6V1B1P15313 513 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 MAOAP21397 527 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 PTPN6P29350 595 aa7.79□□□□□ -1.16
USP54-215ENST00000497106 GZMMP51124 257 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms