RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 MKS1Q9NXB0 559 aa11.57□□□□□ -0.56
PTPRF-214ENST00000496043 DNAJB12Q9NXW2 375 aaKnown RBP11.57□□□□□ -0.56
PTPRF-214ENST00000496043 SH3BP4Q9P0V3 963 aa11.57□□□□□ -0.56
PTPRF-214ENST00000496043 PPP4R1LQ9P1A2 415 aa11.57□□□□□ -0.56
PTPRF-214ENST00000496043 TMED5Q9Y3A6 229 aa11.57□□□□□ -0.56
PTPRF-214ENST00000496043 TRAF6Q9Y4K3 522 aa11.57□□□□□ -0.56
PTPRF-214ENST00000496043 PDPK1O15530 556 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 AKAP10O43572 662 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 SCO2O43819 266 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 TBX19O60806 448 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 CTAG2O75638 210 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 RCBTB2O95199 551 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 PSMG1O95456 288 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 IL33O95760 270 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 NUDT17P0C025 328 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 TMIGD3P0DMS9 266 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-214ENST00000496043 PRPS2P11908 318 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 EVI2BP34910 448 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 GPC1P35052 558 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 LHX2P50458 406 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 RFTN2Q52LD8 501 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-214ENST00000496043 ARL13AQ5H913 290 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-214ENST00000496043 CHMP1BQ7LBR1 199 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 ZNF551Q7Z340 670 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-214ENST00000496043 ADGRE4PQ86SQ3 457 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 C9orf106Q8NAJ2 232 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 OR2T11Q8NH01 316 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 ZFP28Q8NHY6 868 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 DUSP19Q8WTR2 217 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 FAM222BQ8WU58 562 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 PPCDCQ96CD2 204 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 ZBED6CLQ96FA7 236 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-214ENST00000496043 ZNF764Q96H86 408 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-214ENST00000496043 APOPT1Q96IL0 206 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 FCRL1Q96LA6 429 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 ZFP3Q96NJ6 502 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 FAM111AQ96PZ2 611 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 CCT7Q99832 543 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 TUBB1Q9H4B7 451 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 PTGES2Q9H7Z7 377 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 CRIM1Q9NZV1 1036 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 MED11Q9P086 117 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 BAIAP2L1Q9UHR4 511 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 ABCG2Q9UNQ0 655 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 RPH3AQ9Y2J0 694 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-214ENST00000496043 DNAJC15Q9Y5T4 150 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 PTGDR2Q9Y5Y4 395 aa11.56□□□□□ -0.56
PTPRF-214ENST00000496043 CSMD1Q96PZ7 3565 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 CLCA1A8K7I4 914 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 SPAG7O75391 227 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 KCNH1O95259 989 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 PEPDP12955 493 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 DDX5P17844 614 aaKnown RBP11.55□□□□□ -0.56
PTPRF-214ENST00000496043 SDC1P18827 310 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 HK1P19367 917 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 ASMTP46597 345 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 RFX3P48380 749 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 PRKAG1P54619 331 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 EEFSECP57772 596 aaKnown RBP11.55□□□□□ -0.56
PTPRF-214ENST00000496043 HSPB3Q12988 150 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 DAZAP2Q15038 168 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-214ENST00000496043 TESK1Q15569 626 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 UGT3A2Q3SY77 523 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 GALNTL6Q49A17 601 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 VPS26BQ4G0F5 336 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 KANK2Q63ZY3 851 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 ANKRD26P1Q6NSI1 321 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 R3HCC1LQ7Z5L2 792 aaKnown RBP11.55□□□□□ -0.56
PTPRF-214ENST00000496043 MARCH3Q86UD3 253 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 DDIASQ8IXT1 998 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 FADS6Q8N9I5 356 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 OR2M3Q8NG83 312 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 GPR151Q8TDV0 419 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 MTERF3Q96E29 417 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 TSSK3Q96PN8 268 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 SFXN3Q9BWM7 321 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 POLDIP3Q9BY77 421 aaKnown RBP11.55□□□□□ -0.56
PTPRF-214ENST00000496043 ACBD3Q9H3P7 528 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 ACSS1Q9NUB1 689 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-214ENST00000496043 FAM120CQ9NX05 1096 aaKnown RBP11.55□□□□□ -0.56
PTPRF-214ENST00000496043 JKAMPQ9P055 326 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 SLC17A7Q9P2U7 560 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 LGALS13Q9UHV8 139 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 EDARQ9UNE0 448 aa11.55□□□□□ -0.56
PTPRF-214ENST00000496043 ARHGAP21Q5T5U3 1957 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 FAM221AA4D161 298 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 TUBAL3A6NHL2 446 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 TMEM114B3SHH9 223 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 EEF1E1-BLOC1S5C9J1V9 151 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 LINC01387J3KSC0 135 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 LSM1O15116 133 aaKnown RBP11.54□□□□□ -0.56
PTPRF-214ENST00000496043 EEF1E1O43324 174 aaKnown RBP11.54□□□□□ -0.56
PTPRF-214ENST00000496043 UTS2O95399 124 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 CHRNGP07510 517 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 EPXP11678 715 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 ZNF708P17019 499 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 TCEA1P23193 301 aaKnown RBP11.54□□□□□ -0.56
PTPRF-214ENST00000496043 MAPK1P28482 360 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 SERPINB5P36952 375 aa11.54□□□□□ -0.56
PTPRF-214ENST00000496043 CLDN18P56856 261 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms