RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 OR2T29Q8NH02 315 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 OR52P1PQ8NH57 321 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 PMM1Q92871 262 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 LPAR4Q99677 370 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 FBXO34Q9NWN3 711 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 NDUFAF4Q9P032 175 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 CBLCQ9ULV8 474 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 OAZ3Q9UMX2 235 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 IFT52Q9Y366 437 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 PRAMEF25A6NGN4 478 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 FRG2CA6NGY1 282 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 TM4SF5O14894 197 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 KLF7O75840 302 aaPredicted RBP20.05■□□□□ 0.8
SMC4-221ENST00000489573 IFNW1P05000 195 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 CEACAM1P13688 526 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 ATP6V1C1P21283 382 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 PRKAR1BP31321 381 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 PIGAP37287 484 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 GPR143P51810 404 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 DCAF7P61962 342 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 EBPQ15125 230 aaKnown RBP20.05■□□□□ 0.8
SMC4-221ENST00000489573 AP1ARQ63HQ0 302 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 DHRS4L2Q6PKH6 230 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 SLC29A4Q7RTT9 530 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 TIPARPQ7Z3E1 657 aaKnown RBP20.05■□□□□ 0.8
SMC4-221ENST00000489573 TSEN54Q7Z6J9 526 aaKnown RBP20.05■□□□□ 0.8
SMC4-221ENST00000489573 CARM1Q86X55 608 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 VRK2Q86Y07 508 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 EPHX4Q8IUS5 362 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 C9orf40Q8IXQ3 194 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 NFAM1Q8NET5 270 aaPredicted RBP20.05■□□□□ 0.8
SMC4-221ENST00000489573 OR2Y1Q8NGV0 311 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 TMBIM1Q969X1 311 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 ZG16BQ96DA0 208 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 WDR77Q9BQA1 342 aaPredicted RBP20.05■□□□□ 0.8
SMC4-221ENST00000489573 MESP1Q9BRJ9 268 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 C9orf16Q9BUW7 83 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 VCXQ9H320 206 aa20.05■□□□□ 0.8
SMC4-221ENST00000489573 PPIEQ9UNP9 301 aaKnown RBP20.05■□□□□ 0.8
SMC4-221ENST00000489573 C2orf92A0A1B0GVN3 265 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 AGAP5A6NIR3 686 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 SYT5O00445 386 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 DIRAS1O95057 198 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 TNFSF15O95150 251 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 UMODP07911 640 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 ZNF23P17027 643 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 RPS4Y1P22090 263 aaKnown RBP20.04■□□□□ 0.8
SMC4-221ENST00000489573 FOLR3P41439 243 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 RFX3P48380 749 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 PUM1Q14671 1186 aaKnown RBP eCLIP20.04■□□□□ 0.8
SMC4-221ENST00000489573 FAM69BQ5VUD6 431 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 HLA-DQA1Q5Y7H0 255 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 ADIPOR1Q96A54 375 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 LCORQ96JN0 433 aaPredicted RBP20.04■□□□□ 0.8
SMC4-221ENST00000489573 ZNF300Q96RE9 604 aaPredicted RBP20.04■□□□□ 0.8
SMC4-221ENST00000489573 GAL3ST4Q96RP7 486 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 ZNF347Q96SE7 839 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 G6PC3Q9BUM1 346 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 SEMA4CQ9C0C4 833 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 B3GNT4Q9C0J1 378 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 COQ10BQ9H8M1 238 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 ZNF443Q9Y2A4 671 aaPredicted RBP20.04■□□□□ 0.8
SMC4-221ENST00000489573 ENPP4Q9Y6X5 453 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 LOC102723996A0A087X1L8 192 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 DPM1O60762 260 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 LGI1O95970 557 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 IGKV1D-16P01601 117 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 DBIP07108 87 aaKnown RBP20.04■□□□□ 0.8
SMC4-221ENST00000489573 THBS1P07996 1170 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 RAB40ALP0C0E4 278 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 DRD5P21918 477 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 NOVA1P51513 510 aaKnown RBP20.04■□□□□ 0.8
SMC4-221ENST00000489573 LARS2Q15031 903 aaKnown RBP20.04■□□□□ 0.8
SMC4-221ENST00000489573 FLYWCH1Q4VC44 716 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 ZBTB49Q6ZSB9 765 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 COMTD1Q86VU5 262 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 ESX1Q8N693 406 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 BCORP1Q8N888 145 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 ZSCAN1Q8NBB4 408 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 CT55Q8WUE5 264 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 C8orf44Q96CB5 159 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 ZNF184Q99676 751 aaPredicted RBP20.04■□□□□ 0.8
SMC4-221ENST00000489573 AMBRA1Q9C0C7 1298 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 WWTR1Q9GZV5 400 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 NXF5Q9H1B4 397 aaKnown RBP20.04■□□□□ 0.8
SMC4-221ENST00000489573 SLC13A4Q9UKG4 626 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 CNOT11Q9UKZ1 510 aaKnown RBP20.04■□□□□ 0.8
SMC4-221ENST00000489573 ZNF232Q9UNY5 417 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 SLC9A8Q9Y2E8 581 aa20.04■□□□□ 0.8
SMC4-221ENST00000489573 SPEGQ15772 3267 aa20.03■□□□□ 0.8
SMC4-221ENST00000489573 PCDH17O14917 1159 aa20.03■□□□□ 0.8
SMC4-221ENST00000489573 E2F6O75461 281 aa20.03■□□□□ 0.8
SMC4-221ENST00000489573 SEC24DO94855 1032 aaPredicted RBP20.03■□□□□ 0.8
SMC4-221ENST00000489573 EPPINO95925 133 aa20.03■□□□□ 0.8
SMC4-221ENST00000489573 LIN52Q52LA3 116 aa20.03■□□□□ 0.8
SMC4-221ENST00000489573 ZAR1Q86SH2 424 aa20.03■□□□□ 0.8
SMC4-221ENST00000489573 SVOPLQ8N434 492 aa20.03■□□□□ 0.8
SMC4-221ENST00000489573 APCDD1LQ8NCL9 501 aa20.03■□□□□ 0.8
SMC4-221ENST00000489573 VANGL1Q8TAA9 524 aaPredicted RBP20.03■□□□□ 0.8
SMC4-221ENST00000489573 VMP1Q96GC9 406 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms