RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 PPP4R1LQ9P1A2 415 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 PCTPQ9UKL6 214 aa13.75□□□□□ -0.21
MCF2L-228ENST00000487354 CCDC189A1A4V9 331 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 SHISA8B8ZZ34 492 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 EIF3HO15372 352 aaKnown RBP eCLIP13.74□□□□□ -0.21
MCF2L-228ENST00000487354 PHF1O43189 567 aaPredicted RBP13.74□□□□□ -0.21
MCF2L-228ENST00000487354 SS18L1O75177 396 aaPredicted RBP13.74□□□□□ -0.21
MCF2L-228ENST00000487354 IGHV4-39P01824 125 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 C8BP07358 591 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 DEKP35659 375 aaKnown RBP13.74□□□□□ -0.21
MCF2L-228ENST00000487354 ACVR1BP36896 505 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 PSG6Q00889 435 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 OCRLQ01968 901 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 ACAP2Q15057 778 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 GGTA1PQ4G0N0 100 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 RPS27LQ71UM5 84 aaKnown RBP13.74□□□□□ -0.21
MCF2L-228ENST00000487354 MILR1Q7Z6M3 343 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 ATG4DQ86TL0 474 aaPredicted RBP13.74□□□□□ -0.21
MCF2L-228ENST00000487354 WFDC8Q8IUA0 241 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 PLD6Q8N2A8 252 aaKnown RBP13.74□□□□□ -0.21
MCF2L-228ENST00000487354 PTGR2Q8N8N7 351 aaPredicted RBP13.74□□□□□ -0.21
MCF2L-228ENST00000487354 TMEM158Q8WZ71 300 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 NEUROG1Q92886 237 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 C1GALT1C1Q96EU7 318 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 ADGRG7Q96K78 797 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 ACTR6Q9GZN1 396 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 SLCO5A1Q9H2Y9 848 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 CPSF2Q9P2I0 782 aaKnown RBP13.74□□□□□ -0.21
MCF2L-228ENST00000487354 CLEC4AQ9UMR7 237 aa13.74□□□□□ -0.21
MCF2L-228ENST00000487354 MAGED1Q9Y5V3 778 aaPredicted RBP13.74□□□□□ -0.21
MCF2L-228ENST00000487354 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.74□□□□□ -0.213e-7■■■□□ 16.2
MCF2L-228ENST00000487354 PPP6CO00743 305 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 NDUFS7O75251 213 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 KLHL2O95198 593 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 GSTA2P09210 222 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 IL11P20809 199 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 IL12BP29460 328 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 CDKN1AP38936 164 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 EEFSECP57772 596 aaKnown RBP13.73□□□□□ -0.21
MCF2L-228ENST00000487354 GANABQ14697 944 aaKnown RBP13.73□□□□□ -0.21
MCF2L-228ENST00000487354 ETFDHQ16134 617 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 CTU2Q2VPK5 515 aaKnown RBP13.73□□□□□ -0.21
MCF2L-228ENST00000487354 SGO1Q5FBB7 561 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 CCDC116Q8IYX3 515 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 OR7G2Q8NG99 324 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 OR4F6Q8NGB9 312 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 FBF1Q8TES7 1133 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 ERP27Q96DN0 273 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 DTNBP1Q96EV8 351 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 NPAS1Q99742 590 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 YAE1D1Q9NRH1 226 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 AHSPQ9NZD4 102 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 WHRNQ9P202 907 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 ZNF225Q9UK10 706 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 UTS2RQ9UKP6 389 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 SLC12A4Q9UP95 1085 aa13.73□□□□□ -0.21
MCF2L-228ENST00000487354 TNPO3Q9Y5L0 923 aaKnown RBP13.73□□□□□ -0.21
MCF2L-228ENST00000487354 PLCE1Q9P212 2302 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 PDYNP01213 254 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 ALDOAP04075 364 aaKnown RBP13.72□□□□□ -0.21
MCF2L-228ENST00000487354 FCGR2AP12318 317 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 ALDH9A1P49189 494 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 CCNG1P51959 295 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 STX5Q13190 355 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 PRSS53Q2L4Q9 553 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 FAM83EQ2M2I3 478 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 KRTAP24-1Q3LI83 254 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 LETMD1Q6P1Q0 360 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 SLC44A2Q8IWA5 706 aaPredicted RBP13.72□□□□□ -0.21
MCF2L-228ENST00000487354 C1orf52Q8N6N3 182 aaKnown RBP13.72□□□□□ -0.21
MCF2L-228ENST00000487354 GMPPAQ96IJ6 420 aaPredicted RBP13.72□□□□□ -0.21
MCF2L-228ENST00000487354 HBEGFQ99075 208 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 DPH5Q9H2P9 285 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 ABCG2Q9UNQ0 655 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 AP4B1Q9Y6B7 739 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 ALPK2Q86TB3 2170 aa13.72□□□□□ -0.21
MCF2L-228ENST00000487354 MALRD1Q5VYJ5 2156 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 IGLV3-32A0A0A0MS00 114 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 CCDC188H7C350 402 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 LINC01387J3KSC0 135 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 GPRIN2O60269 458 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 PLOD3O60568 738 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 ADAM11O75078 769 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 GUCY1B2O75343 617 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 BCAS2O75934 225 aaPredicted RBP13.71□□□□□ -0.21
MCF2L-228ENST00000487354 IFNA2P01563 188 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 RPS17P08708 135 aaKnown RBP13.71□□□□□ -0.21
MCF2L-228ENST00000487354 PSMB1P20618 241 aaKnown RBP13.71□□□□□ -0.21
MCF2L-228ENST00000487354 TRA2BP62995 288 aaKnown RBP13.71□□□□□ -0.21
MCF2L-228ENST00000487354 PSPHP78330 225 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 RAE1P78406 368 aaKnown RBP13.71□□□□□ -0.21
MCF2L-228ENST00000487354 GUCY2DQ02846 1103 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 IFT88Q13099 833 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 PGGHGQ32M88 737 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 TCHHL1Q5QJ38 904 aaPredicted RBP13.71□□□□□ -0.21
MCF2L-228ENST00000487354 MROH9Q5TGP6 573 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 APOOLQ6UXV4 268 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 CCDC91Q7Z6B0 441 aa13.71□□□□□ -0.21
MCF2L-228ENST00000487354 UHMK1Q8TAS1 419 aaKnown RBP13.71□□□□□ -0.21
MCF2L-228ENST00000487354 PHF21BQ96EK2 531 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms