RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 RNASET2O00584 256 aaKnown RBP13.5□□□□□ -0.25
USP4-212ENST00000486549 SCO2O43819 266 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 NKX2-2O95096 273 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 IL33O95760 270 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 IL12AP29459 219 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 PTGDSP41222 190 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 IDH3AP50213 366 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 CASP6P55212 293 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 PHC1P78364 1004 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 MRPS22P82650 360 aaKnown RBP13.5□□□□□ -0.25
USP4-212ENST00000486549 SLC10A1Q14973 349 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 TOMM20Q15388 145 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 C3AR1Q16581 482 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 DUSP5Q16690 384 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 HYAL4Q2M3T9 481 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 PDCD4Q53EL6 469 aaKnown RBP13.5□□□□□ -0.25
USP4-212ENST00000486549 ANXA8L1Q5VT79 327 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 SLC30A6Q6NXT4 461 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 PAOXQ6QHF9 649 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 FGD2Q7Z6J4 655 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 SPPL2CQ8IUH8 684 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 CHERPQ8IWX8 916 aaKnown RBP13.5□□□□□ -0.25
USP4-212ENST00000486549 COX18Q8N8Q8 333 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 VPS37AQ8NEZ2 397 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 PSMA8Q8TAA3 256 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 MOAP1Q96BY2 351 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 TMEM41AQ96HV5 264 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 GNRHR2Q96P88 292 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 TCF7L2Q9NQB0 619 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 FLRT3Q9NZU0 649 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 TINAGQ9UJW2 476 aa13.5□□□□□ -0.25
USP4-212ENST00000486549 FAF1Q9UNN5 650 aaPredicted RBP13.5□□□□□ -0.25
USP4-212ENST00000486549 RNF103-CHMP3A0A140T963 221 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 PRSS51A0A1B0GVH4 220 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 TRAPPC6AO75865 159 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 TGDSO95455 350 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 LDLRP01130 860 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 IGKV1D-16P01601 117 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 TPOP07202 933 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 RNF224P0DH78 156 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 PTGS2P35354 604 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 MAP3K8P41279 467 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 TRPC1P48995 793 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 PSMD4P55036 377 aaKnown RBP13.49□□□□□ -0.25
USP4-212ENST00000486549 RPS26P62854 115 aaKnown RBP13.49□□□□□ -0.25
USP4-212ENST00000486549 SNTA1Q13424 505 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 GSTA3Q16772 222 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 FNDC7Q5VTL7 733 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 ARHGAP11AQ6P4F7 1023 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 TMEM81Q6P7N7 255 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 ZCCHC12Q6PEW1 402 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 FIGNL1Q6PIW4 674 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 MAMDC2Q7Z304 686 aaPredicted RBP13.49□□□□□ -0.25
USP4-212ENST00000486549 ARFGAP2Q8N6H7 521 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 OR1J4Q8NGS1 313 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 HOXB13Q92826 284 aaPredicted RBP13.49□□□□□ -0.25
USP4-212ENST00000486549 CDS1Q92903 461 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 OR52E6Q96RD3 313 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 ACTRT3Q9BYD9 372 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 SLC6A15Q9H2J7 730 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 PLSCR2Q9NRY7 297 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 FAM120CQ9NX05 1096 aaKnown RBP13.49□□□□□ -0.25
USP4-212ENST00000486549 TNFRSF10DQ9UBN6 386 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 C15orf41Q9Y2V0 281 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 HRH3Q9Y5N1 445 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 WIF1Q9Y5W5 379 aa13.49□□□□□ -0.25
USP4-212ENST00000486549 DIDO1Q9BTC0 2240 aaKnown RBP13.49□□□□□ -0.25
USP4-212ENST00000486549 SPTBN1Q01082 2364 aaKnown RBP13.48□□□□□ -0.25
USP4-212ENST00000486549 TRGV5A0A0B4J1U4 118 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 NPIPA2E9PIF3 369 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 NPIPA3F8WFD2 350 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 CCL21O00585 134 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 PRRG2O14669 202 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 SNPHO15079 494 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 SCN2BO60939 215 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 SLC22A3O75751 556 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 PGRP06401 933 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 KRT16P08779 473 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 ELAVL4P26378 380 aaKnown RBP13.48□□□□□ -0.25
USP4-212ENST00000486549 EVI2BP34910 448 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 CA7P43166 264 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 MAN2A2P49641 1150 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 STX1BP61266 288 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 POU6F2P78424 691 aaPredicted RBP13.48□□□□□ -0.25
USP4-212ENST00000486549 STX5Q13190 355 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 CCNJQ5T5M9 372 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 TIGD3Q6B0B8 471 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 OR5M10Q6IEU7 315 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 CDC73Q6P1J9 531 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 MTFR2Q6P444 385 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 BHLHB9Q6PI77 547 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 C3P1Q6ZMU1 363 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 TRILQ7L0X0 811 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 CD163Q86VB7 1156 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 MIER2Q8N344 545 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 OR9I1Q8NGQ6 314 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 ADAMTS15Q8TE58 950 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 SLC35G5Q96KT7 338 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 NPHS2Q9NP85 383 aa13.48□□□□□ -0.25
USP4-212ENST00000486549 MED4Q9NPJ6 270 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms