RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 KCNK16Q96T55 309 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 PSMB7Q99436 277 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 HNRNPABQ99729 332 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 RIOK1Q9BRS2 568 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 BLZF1Q9H2G9 400 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 MINDY3Q9H8M7 445 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 GNB4Q9HAV0 340 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 FAIMQ9NVQ4 179 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 GID8Q9NWU2 228 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 KLK11Q9UBX7 282 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 PTBP2Q9UKA9 531 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 MRPS18CQ9Y3D5 142 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 CHD4Q14839 1912 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 ROBO3Q96MS0 1386 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 ZNF532Q9HCE3 1301 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 EXOC1LA0A1B0GW35 172 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 ESYT2A0FGR8 921 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 CCDC160A6NGH7 325 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 E9PBE3 544 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 KPNA4O00629 521 aaPredicted RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 ZNF263O14978 683 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 MCF2LO15068 1137 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 PGRMC2O15173 223 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 DENRO43583 198 aaKnown RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 KLRC4O43908 158 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 SELENOFO60613 162 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 KLHL41O60662 606 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 TM7SF2O76062 418 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 UCHL3P15374 230 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 SELEP16581 610 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 ZNF24P17028 368 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 GOT1P17174 413 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 GAP43P17677 238 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 OXTRP30559 389 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 COILP38432 576 aaPredicted RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 ACTR3P61158 418 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 POU5F1Q01860 360 aaKnown RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 COX10Q12887 443 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 ITPK1Q13572 414 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 KIAA0141Q14154 515 aaPredicted RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 GIT2Q14161 759 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 ZNF146Q15072 292 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 SLC15A2Q16348 729 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 UPP1Q16831 310 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 LCE3CQ5T5A8 94 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 DCLRE1AQ6PJP8 1040 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 C4orf22Q6V702 233 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 GLRX5Q86SX6 157 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 CDC20BQ86Y33 519 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 DND1Q8IYX4 353 aaKnown RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 BBS5Q8N3I7 341 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 ZNF420Q8TAQ5 688 aaPredicted RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 FNDC8Q8TC99 324 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 FBXO25Q8TCJ0 367 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 PNPT1Q8TCS8 783 aaKnown RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 DEPDC1BQ8WUY9 529 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 PDLIM5Q96HC4 596 aaKnown RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 ANKRD36BP1Q96IX9 119 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 ATF6BQ99941 703 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 CHCHD5Q9BSY4 110 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 C1orf50Q9BV19 199 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 CRNKL1Q9BZJ0 848 aaKnown RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 QPCTLQ9NXS2 382 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 PSMC3IPQ9P2W1 217 aaPredicted RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 TUBGCP4Q9UGJ1 667 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 NOCTQ9UK39 431 aaKnown RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 PACSIN2Q9UNF0 486 aaPredicted RBP4.79□□□□□ -1.64
USP40-213ENST00000483216 PLCL2Q9UPR0 1127 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 NIP7Q9Y221 180 aaKnown RBP eCLIP4.79□□□□□ -1.64
USP40-213ENST00000483216 C4AP0C0L4 1744 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 C4BP0C0L5 1744 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 TIAM2Q8IVF5 1701 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 SCN7AQ01118 1682 aa4.79□□□□□ -1.64
USP40-213ENST00000483216 A0A1B0GUL6 1792 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 SRCAPQ6ZRS2 3230 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 A0A087X0T9 212 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 RSPH10B2B2RC85 870 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 CENPBD1B2RD01 187 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 SLC30A4O14863 429 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 SPOPO43791 374 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 FAM189A1O60320 539 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 LRCH4O75427 683 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 FAM228BP0C875 321 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 RSPH10BP0C881 870 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 DLATP10515 647 aaKnown RBP4.78□□□□□ -1.64
USP40-213ENST00000483216 EEF2P13639 858 aaKnown RBP4.78□□□□□ -1.64
USP40-213ENST00000483216 CCDC130P13994 396 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 ANPEPP15144 967 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 VCLP18206 1134 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 TAC1P20366 129 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 PRDX6P30041 224 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 FEN1P39748 380 aaKnown RBP4.78□□□□□ -1.64
USP40-213ENST00000483216 CDK16Q00536 496 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 TSPY1Q01534 308 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 ENPEPQ07075 957 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 RIGQ13278 110 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 PPP2R5CQ13362 524 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 PTK6Q13882 451 aa4.78□□□□□ -1.64
USP40-213ENST00000483216 ZNF239Q16600 458 aaKnown RBP4.78□□□□□ -1.64
USP40-213ENST00000483216 ZNF829Q3KNS6 432 aaPredicted RBP4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms