RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 OLIG3Q7RTU3 272 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 GALNT10Q86SR1 603 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 PTOV1Q86YD1 416 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 ZZZ3Q8IYH5 903 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 RNF148Q8N7C7 305 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 C11orf65Q8NCR3 313 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 OR2T12Q8NG77 320 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 NFKBIDQ8NI38 313 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 SLC38A5Q8WUX1 472 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 EXTL1Q92935 676 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 EFHD2Q96C19 240 aaPredicted RBP11.28□□□□□ -0.6
SDC1-206ENST00000482879 REXO5Q96IC2 774 aaKnown RBP11.28□□□□□ -0.6
SDC1-206ENST00000482879 TRNT1Q96Q11 434 aaKnown RBP11.28□□□□□ -0.6
SDC1-206ENST00000482879 ADOQ96SZ5 270 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 KCTD14Q9BQ13 255 aaPredicted RBP11.28□□□□□ -0.6
SDC1-206ENST00000482879 THTPAQ9BU02 230 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 G6PC3Q9BUM1 346 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 ALG2Q9H553 416 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 TMEM38AQ9H6F2 299 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 ZBTB20Q9HC78 741 aaPredicted RBP11.28□□□□□ -0.6
SDC1-206ENST00000482879 RYDENQ9NUL5 291 aaKnown RBP11.28□□□□□ -0.6
SDC1-206ENST00000482879 FBXO34Q9NWN3 711 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 PLA2G3Q9NZ20 509 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 USP22Q9UPT9 525 aa11.28□□□□□ -0.6
SDC1-206ENST00000482879 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.28□□□□□ -0.6
SDC1-206ENST00000482879 ELOVL7A1L3X0 281 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 PRORSD1PA6NEY8 169 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 GSC2O15499 205 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 TSPAN2O60636 221 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 DNAJA2O60884 412 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 STX11O75558 287 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 DNAJC8O75937 253 aaPredicted RBP11.27□□□□□ -0.61
SDC1-206ENST00000482879 H6PDO95479 791 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 ITGB2P05107 769 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 CHRM4P08173 479 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 FBXO45P0C2W1 286 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 PGM1P36871 562 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 TMED10P49755 219 aaKnown RBP11.27□□□□□ -0.61
SDC1-206ENST00000482879 HLCSP50747 726 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 PNLIPRP2P54317 469 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 FBXW4P57775 412 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 HPCAP84074 193 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 OC90Q02509 493 aaPredicted RBP11.27□□□□□ -0.61
SDC1-206ENST00000482879 MFAP5Q13361 173 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 SCARB2Q14108 478 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 GNA13Q14344 377 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 MAPK11Q15759 364 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 VMACQ2NL98 169 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 ZNF791Q3KP31 576 aaPredicted RBP11.27□□□□□ -0.61
SDC1-206ENST00000482879 ZNF468Q5VIY5 522 aaPredicted RBP11.27□□□□□ -0.61
SDC1-206ENST00000482879 REEP3Q6NUK4 255 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 ERICH5Q6P6B1 374 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 LRRC74BQ6ZQY2 392 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 YTHDF3Q7Z739 585 aaKnown RBP11.27□□□□□ -0.61
SDC1-206ENST00000482879 ZAR1Q86SH2 424 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 MICU2Q8IYU8 434 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 ARHGAP24Q8N264 748 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 METTL25Q8N6Q8 603 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 OR5M3Q8NGP4 307 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 DIO2Q92813 273 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 SPACA9Q96E40 222 aaPredicted RBP11.27□□□□□ -0.61
SDC1-206ENST00000482879 CRELD1Q96HD1 420 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 TMEM19Q96HH6 336 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 CNTNAP3BQ96NU0 1288 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 COL21A1Q96P44 957 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 UTP23Q9BRU9 249 aaKnown RBP11.27□□□□□ -0.61
SDC1-206ENST00000482879 CNTNAP3Q9BZ76 1288 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 LRMDAQ9H2I8 198 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 HPF1Q9NWY4 346 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 ANKRD10Q9NXR5 420 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 CALML5Q9NZT1 146 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 CD300AQ9UGN4 299 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 PRPF19Q9UMS4 504 aaKnown RBP11.27□□□□□ -0.61
SDC1-206ENST00000482879 WDR45Q9Y484 360 aa11.27□□□□□ -0.61
SDC1-206ENST00000482879 OR6C70A6NIJ9 312 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 MKRN2OSH3BPM6 223 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 GSTA4O15217 222 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 HS6ST1O60243 411 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 FCMRO60667 390 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 ABCB7O75027 752 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 UGT2B11O75310 529 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 UTS2O95399 124 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 WDPCPO95876 746 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 F10P00742 488 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 CYP4B1P13584 511 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 HSD17B1P14061 328 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 TCN1P20061 433 aaPredicted RBP11.26□□□□□ -0.61
SDC1-206ENST00000482879 PCGF2P35227 344 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 CD96P40200 585 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 CASRP41180 1078 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 CYB561P49447 251 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 CRISP3P54108 245 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 CHRNEQ04844 493 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 CEACAM7Q14002 265 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 EFR3AQ14156 821 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 GPR68Q15743 365 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 NTRK2Q16620 822 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.26□□□□□ -0.61
SDC1-206ENST00000482879 SPATS1Q496A3 300 aa11.26□□□□□ -0.61
SDC1-206ENST00000482879 FLYWCH1Q4VC44 716 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms