RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 NGFRP08138 427 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 ITGA2P17301 1181 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 ATP6V1B2P21281 511 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 PRKAR1BP31321 381 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 PTGER1P34995 402 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 MSX2P35548 267 aaPredicted RBP9.41□□□□□ -0.9
USP39-215ENST00000481409 KRT20P35900 424 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 PNLIPRP2P54317 469 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 RRADP55042 308 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 FUT5Q11128 374 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 EFR3AQ14156 821 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 LARS2Q15031 903 aaKnown RBP9.41□□□□□ -0.9
USP39-215ENST00000481409 MAPK11Q15759 364 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 SYPL1Q16563 259 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 BTBD16Q32M84 506 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 LRRC23Q53EV4 343 aaPredicted RBP9.41□□□□□ -0.9
USP39-215ENST00000481409 EIPR1Q53HC9 387 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 DHRS4L2Q6PKH6 230 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 CYP2R1Q6VVX0 501 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 PPP1R32Q7Z5V6 425 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 SLC44A2Q8IWA5 706 aaPredicted RBP9.41□□□□□ -0.9
USP39-215ENST00000481409 C9orf40Q8IXQ3 194 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 SLC34A3Q8N130 599 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 SLC22A8Q8TCC7 542 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 ADAMTS17Q8TE56 1095 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 NR4A3Q92570 626 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 RAB8BQ92930 207 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 PINK1Q9BXM7 581 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 ITPAQ9BY32 194 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 DEFB126Q9BYW3 111 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 DPH1Q9BZG8 443 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 SLC38A1Q9H2H9 487 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 ANKRA2Q9H9E1 313 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 S100A14Q9HCY8 104 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 SEC14L3Q9UDX4 400 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 AP4S1Q9Y587 144 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 CCDC88CQ9P219 2028 aa9.41□□□□□ -0.9
USP39-215ENST00000481409 TRBV11-1A0A0K0K1C0 115 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 PRAMEF27A3QJZ7 478 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 OR6C70A6NIJ9 312 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 AGAP5A6NIR3 686 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 HS6ST1O60243 411 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 GCM2O75603 506 aaPredicted RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 SEC24DO94855 1032 aaPredicted RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 C1QCP02747 245 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 ALPPP05187 535 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 SERPINA7P05543 415 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 CHRM4P08173 479 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 PABPC4LP0CB38 370 aaKnown RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 NCK1P16333 377 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 RPS4Y1P22090 263 aaKnown RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 PLA2G5P39877 138 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 ADH7P40394 386 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 KCNJ5P48544 419 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 ATP12AP54707 1039 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 CASP9P55211 416 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 RPP38P78345 283 aaKnown RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 KCNC4Q03721 635 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 CHAF1BQ13112 559 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 AIMP2Q13155 320 aaKnown RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 COL9A2Q14055 689 aaPredicted RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 ZNF141Q15928 474 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 LIN52Q52LA3 116 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 CYBRD1Q53TN4 286 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 RNF220Q5VTB9 566 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 TYW3Q6IPR3 259 aaKnown RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 FRRS1Q6ZNA5 592 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 PIWIL3Q7Z3Z3 882 aaKnown RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 MRGPREQ86SM8 312 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 GPALPP1Q8IXQ4 340 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 ADGRG5Q8IZF4 528 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 SLC5A8Q8N695 610 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 BCORP1Q8N888 145 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 ANKFN1Q8N957 763 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 TMEM102Q8N9M5 508 aaPredicted RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 SIMC1Q8NDZ2 872 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 GEMIN6Q8WXD5 167 aaKnown RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 PROX1Q92786 737 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 DIO2Q92813 273 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 FGF11Q92914 225 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 RMND5BQ96G75 393 aaPredicted RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 ZNF354BQ96LW1 612 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 COL21A1Q96P44 957 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 POLR2J2Q9GZM3 115 aaKnown RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 POLR2J3Q9H1A7 115 aaKnown RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 RNPEPL1Q9HAU8 725 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 IL1RAPQ9NPH3 570 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 P4HTMQ9NXG6 502 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 KLHL28Q9NXS3 571 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 C6orf203Q9P0P8 240 aaPredicted RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 STX18Q9P2W9 335 aaKnown RBP9.4□□□□□ -0.9
USP39-215ENST00000481409 MYOTQ9UBF9 498 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 USP22Q9UPT9 525 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 WASF3Q9UPY6 502 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 SLC9A8Q9Y2E8 581 aa9.4□□□□□ -0.9
USP39-215ENST00000481409 A0A1W2PQD3 144 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 ZNF891A8MT65 544 aaPredicted RBP9.39□□□□□ -0.91
USP39-215ENST00000481409 PRKD3O94806 890 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 NID1P14543 1247 aa9.39□□□□□ -0.91
USP39-215ENST00000481409 IL7RP16871 459 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms