RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 FAM90A27PA6NNH2 459 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 TM9SF1O15321 606 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 NKX2-2O95096 273 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 SNRPB2P08579 225 aaKnown RBP21.3■■□□□ 1
C9orf3-215ENST00000478473 PRPS2P11908 318 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 DDX5P17844 614 aaKnown RBP21.3■■□□□ 1
C9orf3-215ENST00000478473 GRK2P25098 689 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 MAPK1P28482 360 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 RPL3P39023 403 aaKnown RBP21.3■■□□□ 1
C9orf3-215ENST00000478473 ZNHIT3Q15649 155 aaPredicted RBP21.3■■□□□ 1
C9orf3-215ENST00000478473 DECR1Q16698 335 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 C6orf136Q5SQH8 315 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 DCST1Q5T197 706 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 CES4AQ5XG92 561 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 ANKRD26P1Q6NSI1 321 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 POMZP3Q6PJE2 187 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 MEX3BQ6ZN04 569 aaKnown RBP21.3■■□□□ 1
C9orf3-215ENST00000478473 ADGRE4PQ86SQ3 457 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 CROCCP2Q86T23 111 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 YRDCQ86U90 279 aaKnown RBP21.3■■□□□ 1
C9orf3-215ENST00000478473 DMRTC2Q8IXT2 367 aaPredicted RBP21.3■■□□□ 1
C9orf3-215ENST00000478473 FADS6Q8N9I5 356 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 CEP70Q8NHQ1 597 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 GIMAP5Q96F15 307 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 UCN2Q96RP3 112 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 CALHM2Q9HA72 323 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 FAM120CQ9NX05 1096 aaKnown RBP21.3■■□□□ 1
C9orf3-215ENST00000478473 MRTO4Q9UKD2 239 aaKnown RBP21.3■■□□□ 1
C9orf3-215ENST00000478473 TACC2O95359 2948 aa21.3■■□□□ 1
C9orf3-215ENST00000478473 MBD3L4A6NDZ8 208 aaPredicted RBP21.29■■□□□ 1
C9orf3-215ENST00000478473 MBD3L3A6NE82 208 aaPredicted RBP21.29■■□□□ 1
C9orf3-215ENST00000478473 MBD3L5A6NJ08 208 aaPredicted RBP21.29■■□□□ 1
C9orf3-215ENST00000478473 AKAP10O43572 662 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 LYPLA1O75608 230 aaPredicted RBP21.29■■□□□ 1
C9orf3-215ENST00000478473 SNUPNO95149 360 aaKnown RBP21.29■■□□□ 1
C9orf3-215ENST00000478473 EVI2BP34910 448 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 C21orf58P58505 322 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 SMU1Q2TAY7 513 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 GALNTL6Q49A17 601 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 ZCCHC12Q6PEW1 402 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 NUDCD3Q8IVD9 361 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 MBD3L2Q8NHZ7 208 aaPredicted RBP21.29■■□□□ 1
C9orf3-215ENST00000478473 PSMA8Q8TAA3 256 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 PGM2Q96G03 612 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 C3orf14Q9HBI5 128 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 SH3BP4Q9P0V3 963 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 ZNF629Q9UEG4 869 aaPredicted RBP21.29■■□□□ 1
C9orf3-215ENST00000478473 FBXL2Q9UKC9 423 aa21.29■■□□□ 1
C9orf3-215ENST00000478473 CSMD1Q96PZ7 3565 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 SCAMP2O15127 329 aaKnown RBP21.28■■□□□ 1
C9orf3-215ENST00000478473 ZIC3O60481 467 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 CHMP24386 653 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 GCKP35557 465 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 PSMD4P55036 377 aaKnown RBP21.28■■□□□ 1
C9orf3-215ENST00000478473 MANFP55145 182 aaKnown RBP21.28■■□□□ 1
C9orf3-215ENST00000478473 HSPB3Q12988 150 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 TOMM20Q15388 145 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 FBXL19-AS1Q494R0 122 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 ATP6AP1LQ52LC2 224 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 LURAP1LQ8IV03 231 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 RIMKLAQ8IXN7 391 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 NATD1Q8N6N6 113 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 CDRT4Q8N9R6 151 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 NAXEQ8NCW5 288 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 CLHC1Q8NHS4 586 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 FAM110BQ8TC76 370 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 COQ8BQ96D53 544 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 SLC24A3Q9HC58 644 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 ASIC5Q9NY37 505 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 TAS2R10Q9NYW0 307 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 HAO1Q9UJM8 370 aa21.28■■□□□ 1
C9orf3-215ENST00000478473 EPB41L3Q9Y2J2 1087 aaPredicted RBP21.28■■□□□ 1
C9orf3-215ENST00000478473 IGLV3-32A0A0A0MS00 114 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 KDM4EB2RXH2 506 aaPredicted RBP21.27■■□□□ 1
C9orf3-215ENST00000478473 PEX11AO75192 247 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 SERPINE1P05121 402 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 NGFRP08138 427 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 BCL2A1Q16548 175 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 VPS26BQ4G0F5 336 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 ENPP6Q6UWR7 440 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 IFNEQ86WN2 208 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 TNIP2Q8NFZ5 429 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 AGR3Q8TD06 166 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 LURAP1Q96LR2 239 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 MS4A4EQ96PG1 132 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 SDHAF3Q9NRP4 125 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 SIRT3Q9NTG7 399 aaPredicted RBP21.27■■□□□ 1
C9orf3-215ENST00000478473 CAMK2AQ9UQM7 478 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 MED12Q93074 2177 aa21.27■■□□□ 1
C9orf3-215ENST00000478473 CSMD2Q7Z408 3487 aa21.26■□□□□ 0.99
C9orf3-215ENST00000478473 EMC8O43402 210 aa21.26■□□□□ 0.99
C9orf3-215ENST00000478473 GABRA3P34903 492 aa21.26■□□□□ 0.99
C9orf3-215ENST00000478473 GPC1P35052 558 aa21.26■□□□□ 0.99
C9orf3-215ENST00000478473 HPCAL1P37235 193 aa21.26■□□□□ 0.99
C9orf3-215ENST00000478473 DSCR4P56555 118 aaPredicted RBP21.26■□□□□ 0.99
C9orf3-215ENST00000478473 B3GALT5-AS1P59052 145 aa21.26■□□□□ 0.99
C9orf3-215ENST00000478473 MPP2Q14168 576 aa21.26■□□□□ 0.99
C9orf3-215ENST00000478473 WDR53Q7Z5U6 358 aaPredicted RBP21.26■□□□□ 0.99
C9orf3-215ENST00000478473 TRIM42Q8IWZ5 723 aa21.26■□□□□ 0.99
C9orf3-215ENST00000478473 NUP43Q8NFH3 380 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms