RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 MBD3L3A6NE82 208 aaPredicted RBP14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 MBD3L5A6NJ08 208 aaPredicted RBP14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 TMEM233B4DJY2 109 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 NUDT17P0C025 328 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 SDC1P18827 310 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 GPC1P35052 558 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 GAS1P54826 345 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 STX5Q13190 355 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 GAB1Q13480 694 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 ZNHIT3Q15649 155 aaPredicted RBP14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 ZNF385BQ569K4 471 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 KANK2Q63ZY3 851 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 ENPP6Q6UWR7 440 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 ZCCHC23Q6ZST2 131 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 ZZZ3Q8IYH5 903 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 OR2L13Q8N349 312 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 C9orf106Q8NAJ2 232 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 MBD3L2Q8NHZ7 208 aaPredicted RBP14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 AGR3Q8TD06 166 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 RNF138Q8WVD3 245 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 TWIST2Q8WVJ9 160 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 DTNBP1Q96EV8 351 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 LRRC46Q96FV0 321 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 FCRL1Q96LA6 429 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 CCT7Q99832 543 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 TUBA1CQ9BQE3 449 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 CALHM2Q9HA72 323 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 Q9N2J8 555 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 FLRT3Q9NZU0 649 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 SH3BP4Q9P0V3 963 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 PPP4R1LQ9P1A2 415 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 ZNF629Q9UEG4 869 aaPredicted RBP14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 LGALS13Q9UHV8 139 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 CBLCQ9ULV8 474 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 DNAJC15Q9Y5T4 150 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 ABCA4P78363 2273 aa14.27□□□□□ -0.13
CCDC88B-205ENST00000472524 B4DXG7 233 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 EEF1E1-BLOC1S5C9J1V9 151 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 NPIPB8E9PQR5 432 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 LSM1O15116 133 aaKnown RBP14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 EEF1E1O43324 174 aaKnown RBP14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 NPHS1O60500 1241 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 PSMG1O95456 288 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 CPN1P15169 458 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 DPP4P27487 766 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 STARP49675 285 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 DGKQP52824 942 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 GFRA1P56159 465 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 DECR1Q16698 335 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 CYP27C1Q4G0S4 372 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 ARL13AQ5H913 290 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 AAGABQ6PD74 315 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 POMZP3Q6PJE2 187 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 PLXDC2Q6UX71 529 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 SZRD1Q7Z422 152 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 ZPLD1Q8TCW7 415 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 TCP10LQ8TDR4 215 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 RNASE6Q93091 150 aaKnown RBP14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 PPCDCQ96CD2 204 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 SH3GL2Q99962 352 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 LMF2Q9BU23 707 aaKnown RBP14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 LIME1Q9H400 295 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 DSN1Q9H410 356 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 REEP4Q9H6H4 257 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 DNAJB12Q9NXW2 375 aaKnown RBP14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 BAIAP2L1Q9UHR4 511 aa14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 V9GYY5 206 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-205ENST00000472524 GXYLT2A0PJZ3 443 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 CLCA1A8K7I4 914 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 SYT5O00445 386 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 PIP5K1BO14986 540 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 CTAG2O75638 210 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 TMIGD3P0DMS9 266 aaPredicted RBP14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 EFNA1P20827 205 aaPredicted RBP14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 CTSSP25774 331 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 GABRA3P34903 492 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 KIR2DL3P43628 341 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 LHX2P50458 406 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 PRKAG1P54619 331 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 RFTN2Q52LD8 501 aaPredicted RBP14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 RNF165Q6ZSG1 346 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 ZFP28Q8NHY6 868 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 AENQ8WTP8 325 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 PIK3R3Q92569 461 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 POM121Q96HA1 1249 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 EML4Q9HC35 981 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 CCM2LQ9NUG4 571 aaPredicted RBP14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 CRIM1Q9NZV1 1036 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 GIMAP2Q9UG22 337 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 MRTO4Q9UKD2 239 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 TRAF6Q9Y4K3 522 aa14.25□□□□□ -0.13
CCDC88B-205ENST00000472524 FADS1O60427 444 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 ZIC3O60481 467 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 IL33O95760 270 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 PRPS2P11908 318 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 CD99P14209 185 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 CREB1P16220 341 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 OPRM1P35372 400 aa14.24□□□□□ -0.13
CCDC88B-205ENST00000472524 MANFP55145 182 aaKnown RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms