RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 HPF1Q9NWY4 346 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 GIN1Q9NXP7 522 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 PCDHGB7Q9Y5F8 929 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 GMEB1Q9Y692 573 aa13.6□□□□□ -0.23
COL9A3-209ENST00000469852 CHCHD2Q9Y6H1 151 aaPredicted RBP13.6□□□□□ -0.23
COL9A3-209ENST00000469852 A0A0G2JMM0 328 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 A0A1W2PPB8 328 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 A0A1W2PRS3 328 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 KIR3DP1A8MWS1 328 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 TNFRSF21O75509 655 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 IL33O95760 270 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 KRT16P08779 473 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 CYP4B1P13584 511 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 SLC6A2P23975 617 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 SYPL1Q16563 259 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 NADK2Q4G0N4 442 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 HEPHL1Q6MZM0 1159 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 C8orf82Q6P1X6 216 aaPredicted RBP13.59□□□□□ -0.23
COL9A3-209ENST00000469852 ZNF843Q8N446 348 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 ZADH2Q8N4Q0 377 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 ANKFN1Q8N957 763 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 PCYOX1LQ8NBM8 494 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 DIO2Q92813 273 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 MAL2Q969L2 176 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 GPATCH1Q9BRR8 931 aaKnown RBP13.59□□□□□ -0.23
COL9A3-209ENST00000469852 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.59□□□□□ -0.23
COL9A3-209ENST00000469852 LUZP4Q9P127 313 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 GMPR2Q9P2T1 348 aaKnown RBP13.59□□□□□ -0.23
COL9A3-209ENST00000469852 USP22Q9UPT9 525 aa13.59□□□□□ -0.23
COL9A3-209ENST00000469852 NPIPA5A0A0B4J1W7 369 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 C17orf51A8MQB3 221 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 NPIPA7E9PJI5 369 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 G3V3Y1 287 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 ASNA1O43681 348 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 FCMRO60667 390 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 ICOSLGO75144 302 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 SLC25A12O75746 678 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 UBOX5O94941 541 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 NPIPA8P0DM63 369 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 NAGAP17050 411 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 GPX2P18283 190 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 CASRP41180 1078 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 GZMMP51124 257 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 DSTNP60981 165 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 DECR1Q16698 335 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 PRAMEF20Q5VT98 475 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 Q6ZS92 163 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 GPALPP1Q8IXQ4 340 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 PSD4Q8NDX1 1056 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 CHDHQ8NE62 594 aaPredicted RBP13.58□□□□□ -0.24
COL9A3-209ENST00000469852 PAQR8Q8TEZ7 354 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 TM9SF4Q92544 642 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 TMEM125Q96AQ2 219 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 ROPN1LQ96C74 230 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 COL21A1Q96P44 957 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 SDF2Q99470 211 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 SLC25A18Q9H1K4 315 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 RUBCNLQ9H714 662 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 KAT8Q9H7Z6 458 aaKnown RBP13.58□□□□□ -0.24
COL9A3-209ENST00000469852 EFCAB1Q9HAE3 211 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 PROK2Q9HC23 129 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 KLHL1Q9NR64 748 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 DEPPQ9NTK1 212 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 GID8Q9NWU2 228 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 CMTM6Q9NX76 183 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 CNOT11Q9UKZ1 510 aaKnown RBP13.58□□□□□ -0.24
COL9A3-209ENST00000469852 HRH3Q9Y5N1 445 aa13.58□□□□□ -0.24
COL9A3-209ENST00000469852 CENPVL1A0A0U1RR11 272 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 OR6C70A6NIJ9 312 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 DUXAA6NLW8 204 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 CCT8L1PA6NM43 557 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 ADAM10O14672 748 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 DPM1O60762 260 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 NPPAP01160 153 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 CHRM4P08173 479 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 BMP2P12643 396 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 PLA2G2AP14555 144 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 PPIBP23284 216 aaKnown RBP13.57□□□□□ -0.24
COL9A3-209ENST00000469852 IL12BP29460 328 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 PTGDSP41222 190 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 TMED10P49755 219 aaKnown RBP13.57□□□□□ -0.24
COL9A3-209ENST00000469852 RNF144AP50876 292 aaPredicted RBP13.57□□□□□ -0.24
COL9A3-209ENST00000469852 PNLIPRP2P54317 469 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 FADDQ13158 208 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 ADRM1Q16186 407 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.57□□□□□ -0.24
COL9A3-209ENST00000469852 GRAMD1BQ3KR37 738 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 ARHGAP11BQ3KRB8 267 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 PLEKHN1Q494U1 663 aaPredicted RBP13.57□□□□□ -0.24
COL9A3-209ENST00000469852 SLC6A19Q695T7 634 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 HACD2Q6Y1H2 254 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 RTL4Q6ZR62 310 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 C16orf62Q7Z3J2 963 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 HMGN2P46Q86SG4 172 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 PTRH1Q86Y79 214 aaKnown RBP13.57□□□□□ -0.24
COL9A3-209ENST00000469852 PTOV1Q86YD1 416 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 OR8J3Q8NGG0 315 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 SPPL2AQ8TCT8 520 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 SCMH1Q96GD3 660 aa13.57□□□□□ -0.24
COL9A3-209ENST00000469852 NSL1Q96IY1 281 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms