RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SIDT2Q8NBJ9 832 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 ENGASEQ8NFI3 743 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 LMO3Q8TAP4 145 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 C2CD4CQ8TF44 421 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 PYDC1Q8WXC3 89 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 SUSD6Q92537 303 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 NTAN1Q96AB6 310 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 RMND5BQ96G75 393 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 URB1-AS1Q96HZ7 61 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 AKR1E2Q96JD6 320 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 C3orf30Q96M34 536 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 VPS35Q96QK1 796 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 CMKLR1Q99788 373 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 CALN1Q9BXU9 219 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 TRIM9Q9C026 710 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 SLC22A4Q9H015 551 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 RACGAP1Q9H0H5 632 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 DPEP3Q9H4B8 488 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 NXF3Q9H4D5 531 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 ELOVL3Q9HB03 270 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 RAB18Q9NP72 206 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 MYOZ2Q9NPC6 264 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 KRCC1Q9NPI7 259 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 DIABLOQ9NR28 239 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 BATF3Q9NR55 127 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 PXMP2Q9NR77 195 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 EXD2Q9NVH0 621 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 SMOXQ9NWM0 555 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 TAS2R14Q9NYV8 317 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 PTTG3PQ9NZH4 202 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 UPB1Q9UBR1 384 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 GINS2Q9Y248 185 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 GRIP1Q9Y3R0 1128 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 PTGDR2Q9Y5Y4 395 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 MROH7-TTC4A0A0A0MT08 1334 aa4.41□□□□□ -1.7
CCDC88A-210ENST00000468534 HEG1Q9ULI3 1381 aa4.4□□□□□ -1.7
CCDC88A-210ENST00000468534 PTPRGP23470 1445 aa4.4□□□□□ -1.7
CCDC88A-210ENST00000468534 A0A1W2PPQ1 181 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 FEZF1A0PJY2 475 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 CBY3A6NI87 242 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 INAFM1C9JVW0 142 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 RNASEK-C17orf49H0YIS7 233 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 MKRN2OSH3BPM6 223 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 DLGAP1O14490 977 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC22A2O15244 555 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 BIRC5O15392 142 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 NBR2O15453 112 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 RS1O15537 224 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 SMIM24O75264 130 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF217O75362 1048 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 VAMP5O95183 116 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 NADKO95544 446 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 F10P00742 488 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 ALDOAP04075 364 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 SERPINE2P07093 398 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 GSTA2P09210 222 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 HOXC6P09630 235 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF7P17097 686 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 EPHX2P34913 555 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 PTGER4P35408 488 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 GCKP35557 465 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC1A2P43004 574 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 CCL11P51671 97 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 IL9RQ01113 521 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC34A1Q06495 639 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 GPR18Q14330 331 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC17A1Q14916 467 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 P2RY14Q15391 338 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 TAF13Q15543 124 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 EXOC3L4Q17RC7 722 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 GTDC1Q4AE62 458 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 ZCWPW2Q504Y3 356 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 C5orf47Q569G3 176 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 C6orf226Q5I0X4 101 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 ENTPD8Q5MY95 495 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 AGAP6Q5VW22 663 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 GPR107Q5VW38 600 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 DUPD1Q68J44 220 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 C3orf33Q6P1S2 294 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 METTL7BQ6UX53 244 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 RBM23Q86U06 439 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC22A16Q86VW1 577 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 ANKRD46Q86W74 232 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 HIPK1Q86Z02 1210 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 TMC8Q8IU68 726 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 CLVS1Q8IUQ0 354 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 DCUN1D3Q8IWE4 304 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 ADGRF3Q8IZF5 1079 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 GPC2Q8N158 579 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 TRAM1L1Q8N609 369 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 LRRC17Q8N6Y2 441 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 LHX4Q969G2 390 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 SFXN2Q96NB2 322 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 ACOX2Q99424 681 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC30A2Q9BRI3 323 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 TRIM15Q9C019 465 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 TKTL2Q9H0I9 626 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 C6orf106Q9H6K1 298 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 NARFLQ9H6Q4 476 aa4.4□□□□□ -1.71
CCDC88A-210ENST00000468534 WDR55Q9H6Y2 383 aaPredicted RBP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms