RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 GUK1Q16774 197 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 ADGRF1Q5T601 910 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 UQCC3Q6UW78 93 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 JAGN1Q8N5M9 183 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 SUN3Q8TAQ9 357 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 KCTD12Q96CX2 325 aaKnown RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 RBM14Q96PK6 669 aaKnown RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 SUCNR1Q9BXA5 334 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 NSUN3Q9H649 340 aaKnown RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 DDX31Q9H8H2 851 aaKnown RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 DNMT3AQ9Y6K1 912 aaPredicted RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 SHPRHQ149N8 1683 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 C9J4A7 227 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 CFIP05156 583 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 NME1P15531 152 aaKnown RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 GCGRP47871 477 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 MLLT11Q13015 90 aaPredicted RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 PCGF3Q3KNV8 242 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 SPANXN4Q5MJ08 99 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 C1orf87Q8N0U7 546 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 RBM18Q96H35 190 aaKnown RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 APMAPQ9HDC9 416 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 FAM212BQ9NTI7 297 aaPredicted RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 COPS7AQ9UBW8 275 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 CORINQ9Y5Q5 1042 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 INSL5Q9Y5Q6 135 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 GRXCR2A6NFK2 248 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 TIMP1P01033 207 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 TGM1P22735 817 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 CASRP41180 1078 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 REEP5Q00765 189 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 CYP27C1Q4G0S4 372 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 ENPP6Q6UWR7 440 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 GLIS1Q8NBF1 620 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 NPRL2Q8WTW4 380 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 WDR77Q9BQA1 342 aaPredicted RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 STRA6Q9BX79 667 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 P2RX2Q9UBL9 471 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 REV1Q9UBZ9 1251 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 PEAK1Q9H792 1746 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 A0A1B0GV50 99 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 TCRBP04435 133 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 C5AR1P21730 350 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 KDELR2P33947 212 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 MAT1AQ00266 395 aaKnown RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 ZNF550Q7Z398 422 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 SLC46A3Q7Z3Q1 461 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 FAM185AQ8N0U4 392 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 DNAJC22Q8N4W6 341 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 IGSF21Q96ID5 467 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 SIGLEC10Q96LC7 697 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 WRAP53Q9BUR4 548 aaKnown RBP12.62□□□□□ -0.39
USP40-208ENST00000450966 KATNBL1Q9H079 304 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 OR52A5Q9H2C5 316 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 NELFAQ9H3P2 528 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 HHATLQ9HCP6 504 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 NEUROD4Q9HD90 331 aa12.62□□□□□ -0.39
USP40-208ENST00000450966 CDK2AP1O14519 115 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 SNAI1O95863 264 aaPredicted RBP12.61□□□□□ -0.39
USP40-208ENST00000450966 RENP00797 406 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 TGFB1P01137 390 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 HAPLN1P10915 354 aaPredicted RBP12.61□□□□□ -0.39
USP40-208ENST00000450966 PSMB1P20618 241 aaKnown RBP12.61□□□□□ -0.39
USP40-208ENST00000450966 SEC13P55735 322 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 PTPRRQ15256 657 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 KIAA1211LQ6NV74 962 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 ZNF600Q6ZNG1 722 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 KLBQ86Z14 1044 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 LAX1Q8IWV1 398 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 OR51G2Q8NGK0 314 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 ZDHHC5Q9C0B5 715 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 TXNRD2Q9NNW7 524 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 FBXW11Q9UKB1 542 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 GABRQQ9UN88 632 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 A8MXE2 369 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 WASH3PC4AMC7 463 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 M0R143 59 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 OR2T1O43869 369 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 MT-ND4P03905 459 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 GIPP09681 153 aaPredicted RBP12.61□□□□□ -0.39
USP40-208ENST00000450966 ARNTP27540 789 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 MC3RP41968 323 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 FABP6P51161 128 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 CD81P60033 236 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 RAP1AP62834 184 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 MAPK14Q16539 360 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 KLHDC8BQ8IXV7 354 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 LILRA2Q8N149 483 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 PMM1Q92871 262 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 RSPRY1Q96DX4 576 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 ADAD1Q96M93 576 aaKnown RBP12.61□□□□□ -0.39
USP40-208ENST00000450966 TRAF4Q9BUZ4 470 aaPredicted RBP12.61□□□□□ -0.39
USP40-208ENST00000450966 STRADBQ9C0K7 418 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 IL36AQ9UHA7 158 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 WIF1Q9Y5W5 379 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 CRYBG1Q9Y4K1 1723 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 SIX3O95343 332 aaPredicted RBP12.61□□□□□ -0.39
USP40-208ENST00000450966 SHMT2P34897 504 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 SNCAP37840 140 aa12.61□□□□□ -0.39
USP40-208ENST00000450966 LIMK1P53667 647 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms