RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 ZNF485Q8NCK3 441 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 TOX2Q96NM4 488 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.06■□□□□ 0.481e-11■■■■■ 50.4
HMGA1-205ENST00000447654 SLC6A20Q9NP91 592 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 ELOVL2Q9NXB9 296 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 A0A0D9SEW6 157 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 PRAMEF25A6NGN4 478 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 ARHGEF33A8MVX0 844 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 NDUFS6O75380 124 aaKnown RBP18.06■□□□□ 0.48
HMGA1-205ENST00000447654 CPSF4O95639 269 aaKnown RBP18.06■□□□□ 0.48
HMGA1-205ENST00000447654 C1QCP02747 245 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 HPXP02790 462 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 HIST1H2ABP04908 130 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 NUDT7P0C024 238 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 PRF1P14222 555 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 CCL23P55773 120 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 DCDP81605 110 aaKnown RBP18.06■□□□□ 0.48
HMGA1-205ENST00000447654 SYTL3Q4VX76 610 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 SYT14P1Q58G82 188 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 FAM109BQ6ICB4 259 aaPredicted RBP18.06■□□□□ 0.48
HMGA1-205ENST00000447654 HIST3H2AQ7L7L0 130 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 SPAG16Q8N0X2 631 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 CPXM2Q8N436 756 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 ZNF296Q8WUU4 475 aaPredicted RBP18.06■□□□□ 0.48
HMGA1-205ENST00000447654 HIST1H2ACQ93077 130 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 MTFMTQ96DP5 389 aaKnown RBP18.06■□□□□ 0.48
HMGA1-205ENST00000447654 ELP4Q96EB1 424 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 COPS8Q99627 209 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 POLR1EQ9GZS1 481 aaKnown RBP18.06■□□□□ 0.48
HMGA1-205ENST00000447654 C20orf85Q9H1P6 137 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 C8orf33Q9H7E9 229 aaPredicted RBP18.06■□□□□ 0.48
HMGA1-205ENST00000447654 WWOXQ9NZC7 414 aa18.06■□□□□ 0.48
HMGA1-205ENST00000447654 NCR1O76036 304 aa18.05■□□□□ 0.48
HMGA1-205ENST00000447654 UBL3O95164 117 aa18.05■□□□□ 0.48
HMGA1-205ENST00000447654 PDYNP01213 254 aa18.05■□□□□ 0.48
HMGA1-205ENST00000447654 AQP1P29972 269 aa18.05■□□□□ 0.48
HMGA1-205ENST00000447654 NPAS4Q8IUM7 802 aa18.05■□□□□ 0.48
HMGA1-205ENST00000447654 RNF113BQ8IZP6 322 aaKnown RBP18.05■□□□□ 0.48
HMGA1-205ENST00000447654 OR6V1Q8N148 313 aa18.05■□□□□ 0.48
HMGA1-205ENST00000447654 SP7Q8TDD2 431 aaPredicted RBP18.05■□□□□ 0.48
HMGA1-205ENST00000447654 GNPDA2Q8TDQ7 276 aa18.05■□□□□ 0.48
HMGA1-205ENST00000447654 SELENOMQ8WWX9 145 aa18.05■□□□□ 0.48
HMGA1-205ENST00000447654 RBM14Q96PK6 669 aaKnown RBP18.05■□□□□ 0.48
HMGA1-205ENST00000447654 LRFN2Q9ULH4 789 aa18.05■□□□□ 0.48
HMGA1-205ENST00000447654 DENND4AQ7Z401 1863 aa18.05■□□□□ 0.48
HMGA1-205ENST00000447654 SLC38A8A6NNN8 435 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 GSTZ1O43708 216 aaPredicted RBP18.04■□□□□ 0.48
HMGA1-205ENST00000447654 FZD7O75084 574 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 GJB5O95377 273 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 SERPINA3P01011 423 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 HEXAP06865 529 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 FBP1P09467 338 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 IFNGR1P15260 489 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 AMD1P17707 334 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 OR1E2P47887 323 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 LGALS3BPQ08380 585 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 HTR4Q13639 388 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 SEC23BQ15437 767 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 SFRP5Q5T4F7 317 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 ANXA8L1Q5VT79 327 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 FAM98AQ8NCA5 519 aaKnown RBP18.04■□□□□ 0.48
HMGA1-205ENST00000447654 BEST4Q8NFU0 473 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 OR6K3Q8NGY3 331 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 GATAD2BQ8WXI9 593 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 ZNF582Q96NG8 517 aaPredicted RBP18.04■□□□□ 0.48
HMGA1-205ENST00000447654 ZNF285Q96NJ3 590 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 GAL3ST1Q99999 423 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 TMEM38AQ9H6F2 299 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 MGAT4CQ9UBM8 478 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 ZNF282Q9UDV7 671 aaPredicted RBP18.04■□□□□ 0.48
HMGA1-205ENST00000447654 PCDHB1Q9Y5F3 818 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 PRR23D1E9PI22 279 aaPredicted RBP18.04■□□□□ 0.48
HMGA1-205ENST00000447654 LRATO95237 230 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 EIF4EP06730 217 aaKnown RBP18.04■□□□□ 0.48
HMGA1-205ENST00000447654 CHRM5P08912 532 aaPredicted RBP18.04■□□□□ 0.48
HMGA1-205ENST00000447654 PRR23D2P0DMB1 279 aaPredicted RBP18.04■□□□□ 0.48
HMGA1-205ENST00000447654 COX7A2P14406 83 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 TNFRSF1BP20333 461 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 OR1E1P30953 314 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 SERINC3Q13530 473 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 IDNKQ5T6J7 187 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 OR2G6Q5TZ20 316 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 KIAA1161Q6NSJ0 714 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 NOXRED1Q6NXP6 359 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.04■□□□□ 0.487e-31■■■■■ 70.4
HMGA1-205ENST00000447654 USP53Q70EK8 1073 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 FBXO22Q8NEZ5 403 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 ABHD1Q96SE0 405 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 WDR26Q9H7D7 661 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 PPP1R14DQ9NXH3 145 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 CDH23Q9H251 3354 aa18.04■□□□□ 0.48
HMGA1-205ENST00000447654 SHISA3A0PJX4 238 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 NAP1L6A6NFF2 107 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 FAAHO00519 579 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 RAMP2O60895 175 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 SRP9P49458 86 aaKnown RBP18.03■□□□□ 0.48
HMGA1-205ENST00000447654 ZNF155Q12901 538 aaPredicted RBP18.03■□□□□ 0.48
HMGA1-205ENST00000447654 SNTB2Q13425 540 aaKnown RBP18.03■□□□□ 0.48
HMGA1-205ENST00000447654 ZSWIM7Q19AV6 140 aa18.03■□□□□ 0.48
HMGA1-205ENST00000447654 RNF212Q495C1 297 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms