RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 HAS2Q92819 552 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 SPACA9Q96E40 222 aaPredicted RBP14.54□□□□□ -0.08
USP40-206ENST00000443711 ZNF583Q96ND8 569 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 COL21A1Q96P44 957 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 TRNT1Q96Q11 434 aaKnown RBP14.54□□□□□ -0.08
USP40-206ENST00000443711 CDRT15Q96T59 188 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 SDF2Q99470 211 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 TMEM38AQ9H6F2 299 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 POLE3Q9NRF9 147 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 HPF1Q9NWY4 346 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 CALML5Q9NZT1 146 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 TMEM181Q9P2C4 612 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 ABCD2Q9UBJ2 740 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 ZNF451Q9Y4E5 1061 aa14.54□□□□□ -0.08
USP40-206ENST00000443711 PRAMEF27A3QJZ7 478 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 OR6C70A6NIJ9 312 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 C5orf58C9J3I9 102 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 NME4O00746 187 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 TP53I11O14683 189 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 GYG2O15488 501 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 SLC28A2O43868 658 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 HS6ST1O60243 411 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 DNAJA2O60884 412 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 STX11O75558 287 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 IGKV1D-16P01601 117 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 GUSBP08236 651 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 ARAFP10398 606 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 CD96P40200 585 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 ST13P50502 369 aaKnown RBP14.53□□□□□ -0.08
USP40-206ENST00000443711 GZMMP51124 257 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 HPCAP84074 193 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 LIPEQ05469 1076 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 RBBP4Q09028 425 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 TUBA3CQ13748 450 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 SYPL1Q16563 259 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 NTRK2Q16620 822 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 COL28A1Q2UY09 1125 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 LINC00303Q3SY05 128 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 CCNJQ5T5M9 372 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 ERICH5Q6P6B1 374 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 TUBA3EQ6PEY2 450 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 LRRC74BQ6ZQY2 392 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 ANKFN1Q8N957 763 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 C11orf65Q8NCR3 313 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 SLC38A5Q8WUX1 472 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 TTC9Q92623 222 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 EFHD2Q96C19 240 aaPredicted RBP14.53□□□□□ -0.08
USP40-206ENST00000443711 SLC7A6OSQ96CW6 309 aaPredicted RBP14.53□□□□□ -0.08
USP40-206ENST00000443711 SGCZQ96LD1 299 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 ADOQ96SZ5 270 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 BTBD10Q9BSF8 475 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 ADNPQ9H2P0 1102 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 PIF1Q9H611 641 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 TRIM45Q9H8W5 580 aaPredicted RBP14.53□□□□□ -0.08
USP40-206ENST00000443711 PLA2G3Q9NZ20 509 aa14.53□□□□□ -0.08
USP40-206ENST00000443711 TNRC6AQ8NDV7 1962 aaKnown RBP14.53□□□□□ -0.08
USP40-206ENST00000443711 CACNA1GO43497 2377 aa14.52□□□□□ -0.08
USP40-206ENST00000443711 OR5H15A6NDH6 313 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 BCHEP06276 602 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 CRISP3P54108 245 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 FBXW4P57775 412 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 RPP38P78345 283 aaKnown RBP14.52□□□□□ -0.09
USP40-206ENST00000443711 ARG2P78540 354 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 CDK6Q00534 326 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 FUT5Q11128 374 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 ADRM1Q16186 407 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 VMACQ2NL98 169 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 SPATS1Q496A3 300 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 DNAL1Q4LDG9 190 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 SAMD4BQ5PRF9 694 aaKnown RBP14.52□□□□□ -0.09
USP40-206ENST00000443711 ZNF468Q5VIY5 522 aaPredicted RBP14.52□□□□□ -0.09
USP40-206ENST00000443711 PRAMEF8Q5VWM4 474 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 PRAMEF7Q5VXH5 474 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 REEP3Q6NUK4 255 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 BNC2Q6ZN30 1099 aaPredicted RBP14.52□□□□□ -0.09
USP40-206ENST00000443711 RTL4Q6ZR62 310 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 IFNEQ86WN2 208 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 PTOV1Q86YD1 416 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 HPS6Q86YV9 775 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 SLC30A8Q8IWU4 369 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 ZZZ3Q8IYH5 903 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 CYP4Z2PQ8N1L4 340 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 ARHGAP24Q8N264 748 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 ZADH2Q8N4Q0 377 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 FAM13CQ8NE31 585 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 OR2T12Q8NG77 320 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 NFKBIDQ8NI38 313 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 PMM1Q92871 262 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 ABHD17AQ96GS6 310 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 TMEM19Q96HH6 336 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 REXO5Q96IC2 774 aaKnown RBP14.52□□□□□ -0.09
USP40-206ENST00000443711 ZNF350Q9GZX5 532 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 FBXO34Q9NWN3 711 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 ANKRD10Q9NXR5 420 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 LRFN1Q9P244 771 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 TUBD1Q9UJT1 453 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 WDR45Q9Y484 360 aa14.52□□□□□ -0.09
USP40-206ENST00000443711 PKD1L2Q7Z442 2459 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 A0A0G2JPF8 293 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 FAM220BPB1ANY3 271 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms