RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 MAPK11Q15759 364 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 ZBED5Q49AG3 693 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 TYW3Q6IPR3 259 aaKnown RBP5.61□□□□□ -1.51
VPS50-205ENST00000441602 KANSL1Q7Z3B3 1105 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 VRK2Q86Y07 508 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 SLITRK4Q8IW52 837 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 ZNF614Q8N883 585 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 OR4K5Q8NGD3 323 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 METTL21AQ8WXB1 218 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 GTPBP3Q969Y2 492 aaKnown RBP5.61□□□□□ -1.51
VPS50-205ENST00000441602 NODALQ96S42 347 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 CXorf56Q9H5V9 222 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 RHCGQ9UBD6 479 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 C19orf25Q9UFG5 118 aaPredicted RBP5.61□□□□□ -1.51
VPS50-205ENST00000441602 ERVK-19Q9WJR5 959 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 PCDHGA10Q9Y5H3 936 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 KCNE3Q9Y6H6 103 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 GOLGA4Q13439 2230 aaKnown RBP5.61□□□□□ -1.51
VPS50-205ENST00000441602 THADAQ6YHU6 1953 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 MYOCOSA0A1B0GUC4 107 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 PRAMEF27A3QJZ7 478 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 TMEM229AB2RXF0 380 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 TMX2-CTNND1H3BSU7 103 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 SLC1A7O00341 560 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 RGS10O43665 173 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 DNAJB6O75190 326 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 CYC1P08574 325 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 ZNF883P0CG24 379 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 CSF2RBP32927 897 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 STAT5AP42229 794 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 GRK6P43250 576 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 LIMS1P48059 325 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 ALDH3B2P48448 385 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 CCL7P80098 99 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 MGAT2Q10469 447 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 FUT5Q11128 374 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 TARDBPQ13148 414 aaKnown RBP eCLIP5.61□□□□□ -1.51
VPS50-205ENST00000441602 KCNAB1Q14722 419 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 MAD2L1BPQ15013 274 aaPredicted RBP5.61□□□□□ -1.51
VPS50-205ENST00000441602 MEP1AQ16819 746 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 PROX2Q3B8N5 592 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 NADK2Q4G0N4 442 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 EXOSC6Q5RKV6 272 aaKnown RBP5.61□□□□□ -1.51
VPS50-205ENST00000441602 PHF19Q5T6S3 580 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 GUSBP11Q6P575 273 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 SLC23A3Q6PIS1 610 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 SLC29A4Q7RTT9 530 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 OR9Q2Q8NGE9 314 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 OR6T1Q8NGN1 323 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 RNF217Q8TC41 542 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 IFI44Q8TCB0 444 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 APOBEC4Q8WW27 367 aaKnown RBP5.61□□□□□ -1.51
VPS50-205ENST00000441602 ACOT11Q8WXI4 607 aaPredicted RBP5.61□□□□□ -1.51
VPS50-205ENST00000441602 FCGR1BQ92637 280 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 CLIP3Q96DZ5 547 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 PLEKHA8Q96JA3 519 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 SLC38A2Q96QD8 506 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 NUDT22Q9BRQ3 303 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 OR10A5Q9H207 317 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 GPN3Q9UHW5 284 aaPredicted RBP5.61□□□□□ -1.51
VPS50-205ENST00000441602 PCDHGB2Q9Y5G2 931 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 MAU2Q9Y6X3 613 aa5.61□□□□□ -1.51
VPS50-205ENST00000441602 SH3D21A4FU49 640 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 EFCAB10A6NFE3 127 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 TRIM64CA6NLI5 447 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 OR6C76A6NM76 312 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 HCRTR1O43613 425 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 BRINP1O60477 761 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 CDC123O75794 336 aaPredicted RBP5.6□□□□□ -1.51
VPS50-205ENST00000441602 LDOC1O95751 146 aaPredicted RBP5.6□□□□□ -1.51
VPS50-205ENST00000441602 TFAP2AP05549 437 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 LINGO3P0C6S8 592 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 GIMD1P0DJR0 217 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 CRHBPP24387 322 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 OR1D4P47884 311 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 CLK3P49761 638 aaKnown RBP5.6□□□□□ -1.51
VPS50-205ENST00000441602 ATP12AP54707 1039 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 ISL1P61371 349 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 COPZ1P61923 177 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 FUT7Q11130 342 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 FOXD4Q12950 439 aaPredicted RBP5.6□□□□□ -1.51
VPS50-205ENST00000441602 ILKQ13418 452 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 RHBDD2Q6NTF9 364 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 PODNL1Q6PEZ8 512 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 FIGNL1Q6PIW4 674 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 ZNF836Q6ZNA1 936 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 RBM44Q6ZP01 1051 aaKnown RBP5.6□□□□□ -1.51
VPS50-205ENST00000441602 PTCHD4Q6ZW05 846 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 TSEN54Q7Z6J9 526 aaKnown RBP5.6□□□□□ -1.51
VPS50-205ENST00000441602 C9orf43Q8TAL5 461 aaPredicted RBP5.6□□□□□ -1.51
VPS50-205ENST00000441602 TRUB1Q8WWH5 349 aaKnown RBP5.6□□□□□ -1.51
VPS50-205ENST00000441602 ZNF501Q96CX3 271 aaPredicted RBP5.6□□□□□ -1.51
VPS50-205ENST00000441602 SLC41A3Q96GZ6 507 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 CCNL2Q96S94 520 aaPredicted RBP5.6□□□□□ -1.51
VPS50-205ENST00000441602 BARD1Q99728 777 aaKnown RBP5.6□□□□□ -1.51
VPS50-205ENST00000441602 YIPF3Q9GZM5 350 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 HHATLQ9HCP6 504 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 TMEM74BQ9NUR3 256 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 CBLCQ9ULV8 474 aa5.6□□□□□ -1.51
VPS50-205ENST00000441602 A4GNTQ9UNA3 340 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms