RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RFX3P48380 749 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 PRIM2P49643 509 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 CLK3P49761 638 aaKnown RBP13.86□□□□□ -0.19
LIMS3-201ENST00000437679 CLDN8P56748 225 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 PMPCAQ10713 525 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 ZNF630Q2M218 657 aaPredicted RBP13.86□□□□□ -0.19
LIMS3-201ENST00000437679 LSM12Q3MHD2 195 aaKnown RBP13.86□□□□□ -0.19
LIMS3-201ENST00000437679 EIPR1Q53HC9 387 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 C1orf185Q5T7R7 199 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 AGBL2Q5U5Z8 902 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 SP5Q6BEB4 398 aaPredicted RBP13.86□□□□□ -0.19
LIMS3-201ENST00000437679 ZNF787Q6DD87 383 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 ZCCHC12Q6PEW1 402 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 B3GNT6Q6ZMB0 384 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 PLCZ1Q86YW0 608 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 RIMKLAQ8IXN7 391 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 MARVELD2Q8N4S9 558 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 WDSUB1Q8N9V3 476 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 RAB3IL1Q8TBN0 382 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 GPR151Q8TDV0 419 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 CA5BP1Q8WTZ4 195 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 ASB5Q8WWX0 329 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 SLC9A6Q92581 669 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 COQ8BQ96D53 544 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 DUSP26Q9BV47 211 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 BHLHE41Q9C0J9 482 aaPredicted RBP13.86□□□□□ -0.19
LIMS3-201ENST00000437679 CHST11Q9NPF2 352 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 ABCG2Q9UNQ0 655 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 PCDHGB3Q9Y5G1 929 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 SNX8Q9Y5X2 465 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 CACNA1DQ01668 2161 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 NOTCH2Q04721 2471 aa13.86□□□□□ -0.19
LIMS3-201ENST00000437679 GXYLT2A0PJZ3 443 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 NKX2-2O95096 273 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 LBPP18428 481 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 PTGER4P35408 488 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 NUP107P57740 925 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 C21orf58P58505 322 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 PGS1Q32NB8 556 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 SPDYE7PQ495Y7 208 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 WIPI1Q5MNZ9 446 aaPredicted RBP13.85□□□□□ -0.19
LIMS3-201ENST00000437679 YRDCQ86U90 279 aaKnown RBP13.85□□□□□ -0.19
LIMS3-201ENST00000437679 LRRC34Q8IZ02 419 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 RPRMLQ8N4K4 120 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 FAM83FQ8NEG4 500 aaPredicted RBP13.85□□□□□ -0.19
LIMS3-201ENST00000437679 OR14L1PQ8NHC6 308 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 RNF138Q8WVD3 245 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 PIK3R3Q92569 461 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 HOXB13Q92826 284 aaPredicted RBP13.85□□□□□ -0.19
LIMS3-201ENST00000437679 FAM120BQ96EK7 910 aaKnown RBP13.85□□□□□ -0.19
LIMS3-201ENST00000437679 RMND5BQ96G75 393 aaPredicted RBP13.85□□□□□ -0.19
LIMS3-201ENST00000437679 DPY30Q9C005 99 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 MANSC1Q9H8J5 431 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 MEAF6Q9HAF1 191 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 NEUROD4Q9HD90 331 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 SDHAF3Q9NRP4 125 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 ZCCHC3Q9NUD5 404 aaKnown RBP13.85□□□□□ -0.19
LIMS3-201ENST00000437679 ARGLU1Q9NWB6 273 aaPredicted RBP13.85□□□□□ -0.19
LIMS3-201ENST00000437679 PPP4R1LQ9P1A2 415 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 SLC6A5Q9Y345 797 aa13.85□□□□□ -0.19
LIMS3-201ENST00000437679 MED12Q93074 2177 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 FAM47E-STBD1D6RA91 191 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 CFLARO15519 480 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 SCO2O43819 266 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 SNNO75324 88 aaPredicted RBP13.84□□□□□ -0.19
LIMS3-201ENST00000437679 C6orf47O95873 294 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 ALOX5P09917 674 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 GRNP28799 593 aaKnown RBP13.84□□□□□ -0.19
LIMS3-201ENST00000437679 MAP3K8P41279 467 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 DIO3P55073 304 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 CRYZQ08257 329 aaKnown RBP13.84□□□□□ -0.19
LIMS3-201ENST00000437679 NHSL2Q5HYW2 709 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 VASNQ6EMK4 673 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 MFSD12Q6NUT3 480 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 CAMKMTQ7Z624 323 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 PM20D2Q8IYS1 436 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 OR4K17Q8NGC6 315 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 OR56A1Q8NGH5 318 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 OR10Q1Q8NGQ4 319 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 PSMA8Q8TAA3 256 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 FBXO30Q8TB52 745 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 NUDT8Q8WV74 236 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 JADE3Q92613 823 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 ABTB1Q969K4 478 aaPredicted RBP13.84□□□□□ -0.19
LIMS3-201ENST00000437679 MOAP1Q96BY2 351 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 GIMAP5Q96F15 307 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 CHMP6Q96FZ7 201 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 C16orf58Q96GQ5 468 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 TIMP4Q99727 224 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 TTYH2Q9BSA4 534 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 OR2B2Q9GZK3 357 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 SIRT3Q9NTG7 399 aaPredicted RBP13.84□□□□□ -0.19
LIMS3-201ENST00000437679 FAM120CQ9NX05 1096 aaKnown RBP13.84□□□□□ -0.19
LIMS3-201ENST00000437679 RNF6Q9Y252 685 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 FAM215AQ9Y5M1 114 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 PKDREJQ9NTG1 2253 aa13.84□□□□□ -0.19
LIMS3-201ENST00000437679 TRPC5OSA6NMA1 111 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 AHRRA9YTQ3 701 aa13.83□□□□□ -0.2
LIMS3-201ENST00000437679 SLCO1B7G3V0H7 640 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms