RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TCRBV16S1A1N1A0A5B0 115 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 TGFBR3LH3BV60 316 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 CLIC1O00299 241 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 NME4O00746 187 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 EMC8O43402 210 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 PDE5AO76074 875 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 STAMBPO95630 424 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 AGAP20933 346 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 CD96P40200 585 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 CCT3P49368 545 aaKnown RBP11.22□□□□□ -0.61
PTPRF-208ENST00000437607 KHKP50053 298 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 EEFSECP57772 596 aaKnown RBP11.22□□□□□ -0.61
PTPRF-208ENST00000437607 RBPJQ06330 500 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF155Q12901 538 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-208ENST00000437607 FADDQ13158 208 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 ELAVL1Q15717 326 aaKnown RBP11.22□□□□□ -0.61
PTPRF-208ENST00000437607 NSDHLQ15738 373 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 BTBD16Q32M84 506 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 RUNDC3AQ59EK9 446 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF628Q5EBL2 1059 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 ACER2Q5QJU3 275 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 SAXO2Q658L1 398 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 NIPBLQ6KC79 2804 aaeCLIP11.22□□□□□ -0.61
PTPRF-208ENST00000437607 NANOGP8Q6NSW7 305 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 ANKRD37Q7Z713 158 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 SIAH3Q8IW03 269 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 CHERPQ8IWX8 916 aaKnown RBP11.22□□□□□ -0.61
PTPRF-208ENST00000437607 ULK2Q8IYT8 1036 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 ZFP90Q8TF47 636 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 THAP3Q8WTV1 239 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-208ENST00000437607 KAT2AQ92830 837 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 TMEM125Q96AQ2 219 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 NEURL3Q96EH8 262 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 FAM120BQ96EK7 910 aaKnown RBP11.22□□□□□ -0.61
PTPRF-208ENST00000437607 SPG11Q96JI7 2443 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 ART5Q96L15 291 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 GPR137Q96N19 417 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 CDRT15Q96T59 188 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 KCTD14Q9BQ13 255 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-208ENST00000437607 ECSITQ9BQ95 431 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 CNPPD1Q9BV87 410 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 CADM1Q9BY67 442 aaKnown RBP11.22□□□□□ -0.61
PTPRF-208ENST00000437607 NANOGQ9H9S0 305 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 PNO1Q9NRX1 252 aaKnown RBP11.22□□□□□ -0.61
PTPRF-208ENST00000437607 ANKRD10Q9NXR5 420 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 MAT2BQ9NZL9 334 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 TMEM181Q9P2C4 612 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 TEKT2Q9UIF3 430 aa11.22□□□□□ -0.61
PTPRF-208ENST00000437607 A0A087WV62 115 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 FAM220BPB1ANY3 271 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 PLOD2O00469 737 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 GSC2O15499 205 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 NQO1P15559 274 aaKnown RBP11.21□□□□□ -0.61
PTPRF-208ENST00000437607 TNNI3P19429 210 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 GALNSP34059 522 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 CRATP43155 626 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 PRKAG1P54619 331 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 OR4D2P58180 307 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 KCNJ2P63252 427 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 MRPS35P82673 323 aaKnown RBP11.21□□□□□ -0.61
PTPRF-208ENST00000437607 TXNL4AP83876 142 aaKnown RBP11.21□□□□□ -0.61
PTPRF-208ENST00000437607 SELPLGQ14242 412 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 TESK1Q15569 626 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 OR1C1Q15619 314 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 PRICKLE4Q2TBC4 344 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 SPATS1Q496A3 300 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 SPINK14Q6IE38 97 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 SPPL2CQ8IUH8 684 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 SLC15A3Q8IY34 581 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 CLEC4FQ8N1N0 589 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 PLPP5Q8NEB5 264 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 NUP43Q8NFH3 380 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 OR7G2Q8NG99 324 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 OR52N2Q8NGI0 321 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 OR14A16Q8NHC5 309 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 JADE3Q92613 823 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 DAZLQ92904 295 aaKnown RBP11.21□□□□□ -0.61
PTPRF-208ENST00000437607 RIT1Q92963 219 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 ELP4Q96EB1 424 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF354BQ96LW1 612 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 FRMD6Q96NE9 622 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 SPATA9Q9BWV2 254 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 ALG2Q9H553 416 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 CXorf21Q9HAI6 301 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 EQTNQ9NQ60 294 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 KLHL1Q9NR64 748 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 CMTM6Q9NX76 183 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 COPS7AQ9UBW8 275 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 FAF1Q9UNN5 650 aaPredicted RBP11.21□□□□□ -0.61
PTPRF-208ENST00000437607 MEMO1Q9Y316 297 aa11.21□□□□□ -0.61
PTPRF-208ENST00000437607 FREM3P0C091 2139 aa11.21□□□□□ -0.62
PTPRF-208ENST00000437607 NCKAP5O14513 1909 aa11.21□□□□□ -0.62
PTPRF-208ENST00000437607 C17orf105B2RV13 164 aa11.2□□□□□ -0.62
PTPRF-208ENST00000437607 ANKRD65E5RJM6 399 aa11.2□□□□□ -0.62
PTPRF-208ENST00000437607 NPIPA5E9PKD4 350 aa11.2□□□□□ -0.62
PTPRF-208ENST00000437607 PLOD3O60568 738 aa11.2□□□□□ -0.62
PTPRF-208ENST00000437607 NEURL1O76050 574 aa11.2□□□□□ -0.62
PTPRF-208ENST00000437607 CLDN14O95500 239 aa11.2□□□□□ -0.62
PTPRF-208ENST00000437607 TCN1P20061 433 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-208ENST00000437607 ME2P23368 584 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms