RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 SNAPC1Q16533 368 aa10.04□□□□□ -0.8
TCOF1-204ENST00000427724 C1orf94Q6P1W5 598 aa10.04□□□□□ -0.8
TCOF1-204ENST00000427724 OR7G3Q8NG95 312 aa10.04□□□□□ -0.8
TCOF1-204ENST00000427724 OR5K2Q8NHB8 316 aa10.04□□□□□ -0.8
TCOF1-204ENST00000427724 C1GALT1C1Q96EU7 318 aa10.04□□□□□ -0.8
TCOF1-204ENST00000427724 SLC38A2Q96QD8 506 aa10.04□□□□□ -0.8
TCOF1-204ENST00000427724 P2RX2Q9UBL9 471 aa10.04□□□□□ -0.8
TCOF1-204ENST00000427724 B3GNT3Q9Y2A9 372 aa10.04□□□□□ -0.8
TCOF1-204ENST00000427724 SIPA1L1O43166 1804 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 NUP214P35658 2090 aaPredicted RBP10.03□□□□□ -0.8
TCOF1-204ENST00000427724 SMIM30A4D0T7 59 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 OR5K3A6NET4 321 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 CENPBD1B2RD01 187 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 MOSPD3O75425 235 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 OLFM2O95897 454 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 PRG2P13727 222 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 AOAHP28039 575 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 LGALS3BPQ08380 585 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 EXOC3L2Q2M3D2 409 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 ATG9BQ674R7 924 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 OR5M10Q6IEU7 315 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 SLC30A6Q6NXT4 461 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 NUP43Q8NFH3 380 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 OR51Q1Q8NH59 317 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 TMEM234Q8WY98 164 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 CCDC74BQ96LY2 380 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 Q96MT0 163 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 NUDT22Q9BRQ3 303 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 LRRC61Q9BV99 259 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 MROQ9BYG7 248 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 S1PR5Q9H228 398 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 SSR3Q9UNL2 185 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 RNF6Q9Y252 685 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 UGT2A1Q9Y4X1 527 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 POLEQ07864 2286 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 SPTBN1Q01082 2364 aaKnown RBP10.03□□□□□ -0.8
TCOF1-204ENST00000427724 HPRP00739 348 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 IFNGP01579 166 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 RPS3P23396 243 aaKnown RBP eCLIP10.03□□□□□ -0.8
TCOF1-204ENST00000427724 CD40LGP29965 261 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 KDELR2P33947 212 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 SFTPDP35247 375 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 CXADRP78310 365 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 NDUFAF5Q5TEU4 345 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 TBPL2Q6SJ96 375 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 KRT74Q7RTS7 529 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 ADAMTS18Q8TE60 1221 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 FCRL4Q96PJ5 515 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 PKMYT1Q99640 499 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 ITPAQ9BY32 194 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 MMP27Q9H306 513 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 SERHL2Q9H4I8 314 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 SERHLQ9NQF3 203 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 NRXN2Q9P2S2 1712 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 A0A1B0GTL3 188 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 OPN1LWP04000 364 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 PSMA1P25786 263 aaKnown RBP10.03□□□□□ -0.8
TCOF1-204ENST00000427724 ZXDBP98169 803 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 ARHGAP19Q14CB8 494 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 EIPR1Q53HC9 387 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 PRAMEF20Q5VT98 475 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 TMEM184AQ6ZMB5 413 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 Q6ZSR9 355 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 NATD1Q8N6N6 113 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 NFKBIDQ8NI38 313 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 THOC3Q96J01 351 aaKnown RBP10.03□□□□□ -0.8
TCOF1-204ENST00000427724 RHCGQ9UBD6 479 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 AKAP6Q13023 2319 aa10.03□□□□□ -0.8
TCOF1-204ENST00000427724 A0A096LPI6 279 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 FABP12A6NFH5 140 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 STMND1H3BQB6 276 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 ACOX3O15254 700 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 NME6O75414 186 aaPredicted RBP10.02□□□□□ -0.8
TCOF1-204ENST00000427724 CCNB2O95067 398 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 TIA1P31483 386 aaKnown RBP eCLIP10.02□□□□□ -0.8
TCOF1-204ENST00000427724 CDK6Q00534 326 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 CHAF1BQ13112 559 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 TARDBPQ13148 414 aaKnown RBP eCLIP10.02□□□□□ -0.8
TCOF1-204ENST00000427724 CLCA4Q14CN2 919 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 VMACQ2NL98 169 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 MANEALQ5VSG8 457 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 FCRLBQ6BAA4 426 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 SPATC1Q76KD6 591 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 TEX26Q8N6G2 289 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.02□□□□□ -0.8
TCOF1-204ENST00000427724 ZFPM2Q8WW38 1151 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 MSLNLQ96KJ4 702 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 REEP4Q9H6H4 257 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 BRD7Q9NPI1 651 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 NLGN3Q9NZ94 848 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 VDAC3Q9Y277 283 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 PCDHGA5Q9Y5G8 931 aa10.02□□□□□ -0.8
TCOF1-204ENST00000427724 LRRC37AA6NMS7 1700 aa10.02□□□□□ -0.81
TCOF1-204ENST00000427724 IGHV3-20A0A0C4DH32 117 aa10.02□□□□□ -0.81
TCOF1-204ENST00000427724 CPSF4LA6NMK7 179 aaKnown RBP10.02□□□□□ -0.81
TCOF1-204ENST00000427724 BMP4P12644 408 aa10.02□□□□□ -0.81
TCOF1-204ENST00000427724 NME1P15531 152 aaKnown RBP10.02□□□□□ -0.81
TCOF1-204ENST00000427724 ZNF823P16415 610 aa10.02□□□□□ -0.81
TCOF1-204ENST00000427724 STK11Q15831 433 aa10.02□□□□□ -0.81
TCOF1-204ENST00000427724 AGAP7PQ5VUJ5 663 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms