RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 HRASLS5Q96KN8 279 aa7.83□□□□□ -1.16
USP54-203ENST00000418501 SDF2Q99470 211 aa7.83□□□□□ -1.16
USP54-203ENST00000418501 LPAR4Q99677 370 aa7.83□□□□□ -1.16
USP54-203ENST00000418501 ARHGDIGQ99819 225 aa7.83□□□□□ -1.16
USP54-203ENST00000418501 AMBRA1Q9C0C7 1298 aa7.83□□□□□ -1.16
USP54-203ENST00000418501 ZNF350Q9GZX5 532 aa7.83□□□□□ -1.16
USP54-203ENST00000418501 TBC1D23Q9NUY8 699 aa7.83□□□□□ -1.16
USP54-203ENST00000418501 UCKL1Q9NWZ5 548 aa7.83□□□□□ -1.16
USP54-203ENST00000418501 IGHV5-51A0A0C4DH38 117 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 EFCAB7A8K855 629 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 REM1O75628 298 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 SCRG1O75711 98 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 CYP4B1P13584 511 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 NID1P14543 1247 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 RAB15P59190 212 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 IGLV3-21P80748 117 aaPredicted RBP7.82□□□□□ -1.16
USP54-203ENST00000418501 CHRNEQ04844 493 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 SYT16Q17RD7 645 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 PRICKLE4Q2TBC4 344 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 SLC23A3Q6PIS1 610 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 TMCO5AQ8N6Q1 288 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 SLC41A3Q96GZ6 507 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 CMKLR1Q99788 373 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 OR8D2Q9GZM6 311 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 SPRTNQ9H040 489 aaPredicted RBP7.82□□□□□ -1.16
USP54-203ENST00000418501 UBQLN4Q9NRR5 601 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 SEMA5BQ9P283 1151 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 ERGIC3Q9Y282 383 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 PCDHGA10Q9Y5H3 936 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 LRRK1Q38SD2 2015 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 AGAP5A6NIR3 686 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 EIF4E1BA6NMX2 242 aaKnown RBP7.82□□□□□ -1.16
USP54-203ENST00000418501 SIGLEC6O43699 453 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 HCN1O60741 890 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 PRKRAO75569 313 aaKnown RBP7.82□□□□□ -1.16
USP54-203ENST00000418501 TRMUO75648 421 aaKnown RBP7.82□□□□□ -1.16
USP54-203ENST00000418501 GP1BAP07359 652 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 PNMTP11086 282 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 PPICP45877 212 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 ILKQ13418 452 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 LTB4RQ15722 352 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 FAM111BQ6SJ93 734 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 USP51Q70EK9 711 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 MED25Q71SY5 747 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 BMP8AQ7Z5Y6 402 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 SLC22A8Q8TCC7 542 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 TMCO6Q96DC7 493 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 CSF3RQ99062 836 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 TBL1XR1Q9BZK7 514 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 FAM60AQ9NP50 221 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 ERVK-19Q9WJR5 959 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 C2orf92A0A1B0GVN3 265 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 PTGES3LE9PB15 166 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 SLC25A12O75746 678 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 CSTAP01040 98 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 HOXB3P14651 431 aaPredicted RBP7.82□□□□□ -1.16
USP54-203ENST00000418501 RBM34P42696 430 aaKnown RBP7.82□□□□□ -1.16
USP54-203ENST00000418501 BNC1Q01954 994 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 OR4K5Q8NGD3 323 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 RHBDD1Q8TEB9 315 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 SAP25Q8TEE9 199 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 ZNF566Q969W8 418 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 PITX2Q99697 317 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 MED17Q9NVC6 651 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 MKLN1Q9UL63 735 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 NEUROG3Q9Y4Z2 214 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 PCDHGB6Q9Y5F9 930 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 KIAA0513O60268 411 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 CKMT1AP12532 417 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 DAPP51397 102 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 EMP2P54851 167 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 MYBPC1Q00872 1141 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 RHBDD2Q6NTF9 364 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 FAM180BQ6P0A1 224 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 TSSK4Q6SA08 328 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 GALNT10Q86SR1 603 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 SLC16A11Q8NCK7 471 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 OR5T3Q8NGG3 340 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 ZNF563Q8TA94 476 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 TMEM234Q8WY98 164 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 LCORQ96JN0 433 aaPredicted RBP7.82□□□□□ -1.16
USP54-203ENST00000418501 GAL3ST4Q96RP7 486 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 YIPF3Q9GZM5 350 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 ACER3Q9NUN7 267 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 KCND3Q9UK17 655 aa7.82□□□□□ -1.16
USP54-203ENST00000418501 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.82□□□□□ -1.16
USP54-203ENST00000418501 COL4A2P08572 1712 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 MYL12BO14950 172 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 CHRM4P08173 479 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 TSPAN31Q12999 210 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 SNAPC1Q16533 368 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 NKG7Q16617 165 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 DUSP5Q16690 384 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 ANKDD1AQ495B1 522 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 ARMC4Q5T2S8 1044 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 LAIR1Q6GTX8 287 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 SLC27A4Q6P1M0 643 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 C5orf46Q6UWT4 87 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 GATAD2AQ86YP4 633 aa7.81□□□□□ -1.16
USP54-203ENST00000418501 RAB2BQ8WUD1 216 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms