RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 OR9A1PQ8NGU1 263 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 FAM45AQ8TCE6 357 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 SMPDL3AQ92484 453 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 STARD8Q92502 1023 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 CMTM3Q96MX0 182 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 BIRC8Q96P09 236 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 ZIM3Q96PE6 472 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 FMO2Q99518 471 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 SRSF8Q9BRL6 282 aaKnown RBP5.93□□□□□ -1.46
USP40-202ENST00000409945 TRIM51Q9BSJ1 452 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 NLNQ9BYT8 704 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 PCBD2Q9H0N5 130 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 LHX9Q9NQ69 397 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 MTRF1LQ9UGC7 380 aaKnown RBP5.93□□□□□ -1.46
USP40-202ENST00000409945 SNX24Q9Y343 169 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 DHRS7Q9Y394 339 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 FAM96BQ9Y3D0 163 aa5.93□□□□□ -1.46
USP40-202ENST00000409945 PTPRQQ9UMZ3 2332 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 TXNDC9O14530 226 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 PRPF4O43172 522 aaKnown RBP eCLIP5.92□□□□□ -1.46
USP40-202ENST00000409945 KLHL41O60662 606 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 IGHEP01854 428 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 GSTA2P09210 222 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 PRF1P14222 555 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 AGAP20933 346 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 HRH2P25021 359 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 PIGAP37287 484 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 PWWP2BQ6NUJ5 590 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 GALNT5Q7Z7M9 940 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 CROCCP2Q86T23 111 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 SLC26A11Q86WA9 606 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 CNTN4Q8IWV2 1026 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 FBXO36Q8NEA4 188 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 HMGCLL1Q8TB92 370 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 ATL1Q8WXF7 558 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 SNAPC3Q92966 411 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 TMEM18Q96B42 140 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 ZNF501Q96CX3 271 aaPredicted RBP5.92□□□□□ -1.46
USP40-202ENST00000409945 FAM120BQ96EK7 910 aaKnown RBP5.92□□□□□ -1.46
USP40-202ENST00000409945 LRFN5Q96NI6 719 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 OR2A14Q96R47 310 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 GPR21Q99679 349 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 DPH5Q9H2P9 285 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 ANKMY1Q9P2S6 941 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 C11orf21Q9P2W6 132 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 HAO1Q9UJM8 370 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 PLAGL1Q9UM63 463 aa5.92□□□□□ -1.46
USP40-202ENST00000409945 LAMA5O15230 3695 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 LOC101059948A0A1B0GTJ6 334 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 GTPBP1O00178 669 aaKnown RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 SLC16A5O15375 505 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 SRPX2O60687 465 aaPredicted RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 SHOX2O60902 331 aaPredicted RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 PSIP1O75475 530 aaKnown RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 MYZAPP0CAP1 466 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 ETFAP13804 333 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 PSMA4P25789 261 aaKnown RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 PHBP35232 272 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 HSD17B3P37058 310 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 BDKRB1P46663 353 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 RPL21P46778 160 aaKnown RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 PMS2P54278 862 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 P2RX3P56373 397 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 SELENOVP59797 346 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 NANOS3P60323 173 aaKnown RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 ABATP80404 500 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 SSBP2P81877 361 aaPredicted RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 CSTF3Q12996 717 aaKnown RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 MTX3Q5HYI7 312 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 FIGLAQ6QHK4 219 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 ADCK2Q7Z695 626 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 SYVN1Q86TM6 617 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 LCA5Q86VQ0 697 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 ARFGAP2Q8N6H7 521 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 LKAAEAR1Q8TD35 194 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 APOBEC4Q8WW27 367 aaKnown RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 RERGQ96A58 199 aaPredicted RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 RNF183Q96D59 192 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 ELMOD3Q96FG2 381 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 IP6K3Q96PC2 410 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 SELENOSQ9BQE4 189 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 ADNPQ9H2P0 1102 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 MRPS30Q9NP92 439 aaKnown RBP5.91□□□□□ -1.46
USP40-202ENST00000409945 SNX7Q9UNH6 387 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 CARD8Q9Y2G2 431 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 TEX264Q9Y6I9 313 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 SDK2Q58EX2 2172 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 NBEAQ8NFP9 2946 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 ERICH4A6NGS2 130 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 ZNF749O43361 778 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 CREG1O75629 220 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 RAB40ALP0C0E4 278 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 PRKAR1AP10644 381 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 PVRP15151 417 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 MAGP20916 626 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 IVDP26440 423 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 PTPN4P29074 926 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 STX2P32856 288 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 PLTPP55058 493 aa5.91□□□□□ -1.46
USP40-202ENST00000409945 AP1S2P56377 157 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms