RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 RAB15P59190 212 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 KCNC4Q03721 635 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 CT45A2Q5DJT8 189 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 C6orf52Q5T4I8 152 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 PPP4R4Q6NUP7 873 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 PIWIL3Q7Z3Z3 882 aaKnown RBP11.55□□□□□ -0.56
CHMP3-204ENST00000409727 PEX5LQ8IYB4 626 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 ZNF619Q8N2I2 560 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 ZNF614Q8N883 585 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 OR14A16Q8NHC5 309 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 DEPDC7Q96QD5 511 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 LMF1Q96S06 567 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 BARD1Q99728 777 aaKnown RBP11.55□□□□□ -0.56
CHMP3-204ENST00000409727 NRSN2Q9GZP1 204 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 ZNF350Q9GZX5 532 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 MTHFD2LQ9H903 347 aaPredicted RBP11.55□□□□□ -0.56
CHMP3-204ENST00000409727 SMURF2Q9HAU4 748 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 Q9N2J8 555 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 COPS7AQ9UBW8 275 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 SLC13A4Q9UKG4 626 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 SATB2Q9UPW6 733 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 PCDHGA1Q9Y5H4 931 aa11.55□□□□□ -0.56
CHMP3-204ENST00000409727 A0A1W2PNU3 283 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-204ENST00000409727 CDC14CA4D256 554 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 C7orf72A4D263 438 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 C9J4A7 227 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 TMX2-CTNND1H3BSU7 103 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 PLD2O14939 933 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 IGKV1D-16P01601 117 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 IGKV3-11P04433 115 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 RPSAP08865 295 aaKnown RBP11.54□□□□□ -0.56
CHMP3-204ENST00000409727 ITGA2P17301 1181 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 ATP6V1C1P21283 382 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 FUT4P22083 530 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 CDH12P55289 794 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 MAPK14Q16539 360 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 FLYWCH1Q4VC44 716 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 MRPL14Q6P1L8 145 aaKnown RBP11.54□□□□□ -0.56
CHMP3-204ENST00000409727 MARCH9Q86YJ5 346 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 APOBEC4Q8WW27 367 aaKnown RBP11.54□□□□□ -0.56
CHMP3-204ENST00000409727 HOXB13Q92826 284 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-204ENST00000409727 FKBP10Q96AY3 582 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 LIN37Q96GY3 246 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-204ENST00000409727 ZNF570Q96NI8 536 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 PHOX2BQ99453 314 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 PINK1Q9BXM7 581 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 IRF2BPLQ9H1B7 796 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 CTPS2Q9NRF8 586 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 THSD1Q9NS62 852 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 CBLCQ9ULV8 474 aa11.54□□□□□ -0.56
CHMP3-204ENST00000409727 ZNF443Q9Y2A4 671 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-204ENST00000409727 GPR55Q9Y2T6 319 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-204ENST00000409727 AGAP5A6NIR3 686 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 BRINP1O60477 761 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 SEC24DO94855 1032 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 ONECUT2O95948 504 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 AK1P00568 194 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 ALBP02768 609 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 HOXC5Q00444 222 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 FAM198BQ6UWH4 519 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 ZNF836Q6ZNA1 936 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 C9orf40Q8IXQ3 194 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 PRR22Q8IZ63 422 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 CLIP4Q8N3C7 705 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 OR1N1Q8NGS0 311 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 OR5K1Q8NHB7 308 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 EFHD2Q96C19 240 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 NAF1Q96HR8 494 aaKnown RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 SLC46A1Q96NT5 459 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 TAAR9Q96RI9 348 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 PIP5K1AQ99755 562 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 PRR14Q9BWN1 585 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 NXF5Q9H1B4 397 aaKnown RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 SLC26A1Q9H2B4 701 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 TRIM45Q9H8W5 580 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 LIN28AQ9H9Z2 209 aaKnown RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 PDP1Q9P0J1 537 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 KCNE5Q9UJ90 142 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 CNOT11Q9UKZ1 510 aaKnown RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 ZNF232Q9UNY5 417 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 SLC9A8Q9Y2E8 581 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 PTRH2Q9Y3E5 179 aaKnown RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 CHST2Q9Y4C5 530 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 ENPP4Q9Y6X5 453 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 CCDC187A0A096LP49 1063 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 C2orf92A0A1B0GVN3 265 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 TNFRSF11BO00300 401 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 KIAA0513O60268 411 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 TPST2O60704 377 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 UGT2B17O75795 530 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 LGI1O95970 557 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 FTH1P19P0C7X4 201 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 ACADSP16219 412 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 DNAJA1P31689 397 aaKnown RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 TRHRP34981 398 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 ARHGDIAP52565 204 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 LARS2Q15031 903 aaKnown RBP11.53□□□□□ -0.56
CHMP3-204ENST00000409727 NCF4Q15080 339 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 HLA-DQA1Q5Y7H0 255 aa11.53□□□□□ -0.56
CHMP3-204ENST00000409727 SHQ1Q6PI26 577 aaKnown RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms