RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 CLDN24A6NM45 220 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 EIF4E1BA6NMX2 242 aaKnown RBP13.04□□□□□ -0.32
GPNMB-203ENST00000409458 SYT5O00445 386 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 PEX12O00623 359 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 BRINP1O60477 761 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 CNOT3O75175 753 aaKnown RBP13.04□□□□□ -0.32
GPNMB-203ENST00000409458 RFPL3O75679 317 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 IGKV1D-16P01601 117 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 IGKV3-11P04433 115 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 CT45A8P0DMV1 189 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 CT45A9P0DMV2 189 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 TRHRP34981 398 aaPredicted RBP13.04□□□□□ -0.32
GPNMB-203ENST00000409458 ARHGDIAP52565 204 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 INSM1Q01101 510 aaPredicted RBP13.04□□□□□ -0.32
GPNMB-203ENST00000409458 NPTX1Q15818 432 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 MAPK14Q16539 360 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 KIF26BQ2KJY2 2108 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 EXOC3L2Q2M3D2 409 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 SLC36A3Q495N2 470 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 CT45A2Q5DJT8 189 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 FAAH2Q6GMR7 532 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 OVCH1Q7RTY7 1134 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 CLIP4Q8N3C7 705 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 ZSCAN1Q8NBB4 408 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 OR14A16Q8NHC5 309 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 CYGBQ8WWM9 190 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 MBOAT4Q96T53 435 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 ANKRD60Q9BZ19 345 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 TRIM45Q9H8W5 580 aaPredicted RBP13.04□□□□□ -0.32
GPNMB-203ENST00000409458 MTHFD2LQ9H903 347 aaPredicted RBP13.04□□□□□ -0.32
GPNMB-203ENST00000409458 FBXO8Q9NRD0 319 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 ACER3Q9NUN7 267 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 PRODH2Q9UF12 536 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 KCNE5Q9UJ90 142 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 SLC9A8Q9Y2E8 581 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 CLCA3PQ9Y6N3 262 aa13.04□□□□□ -0.32
GPNMB-203ENST00000409458 VSTM2BA6NLU5 285 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 IDSB3KWA1 339 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 MEN1O00255 615 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 FRS3O43559 492 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 DYRK3O43781 588 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 MITFO75030 526 aaPredicted RBP13.03□□□□□ -0.32
GPNMB-203ENST00000409458 GNAO1P09471 354 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 UBTFL6P0CB48 400 aaPredicted RBP13.03□□□□□ -0.32
GPNMB-203ENST00000409458 ITIH1P19827 911 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 CAPGP40121 348 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 LIMS1P48059 325 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 RFX3P48380 749 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 DAPP51397 102 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 CSRP2Q16527 193 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 TSPYL5Q86VY4 417 aaPredicted RBP13.03□□□□□ -0.32
GPNMB-203ENST00000409458 CYP4Z1Q86W10 505 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 PEX5LQ8IYB4 626 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 C7orf57Q8NEG2 295 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 NR1H4Q96RI1 486 aaPredicted RBP13.03□□□□□ -0.32
GPNMB-203ENST00000409458 MESP1Q9BRJ9 268 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 COL25A1Q9BXS0 654 aaPredicted RBP13.03□□□□□ -0.32
GPNMB-203ENST00000409458 TOR3AQ9H497 397 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 AKIRIN1Q9H9L7 192 aaPredicted RBP13.03□□□□□ -0.32
GPNMB-203ENST00000409458 Q9N2J8 555 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 POLE3Q9NRF9 147 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 RLIMQ9NVW2 624 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 SLC39A1Q9NY26 324 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 ACAD8Q9UKU7 415 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 A4GNTQ9UNA3 340 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 IFT52Q9Y366 437 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 LOXL2Q9Y4K0 774 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 CACNA1HO95180 2353 aa13.03□□□□□ -0.32
GPNMB-203ENST00000409458 B4E171 279 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 PRKNO60260 465 aaPredicted RBP13.02□□□□□ -0.32
GPNMB-203ENST00000409458 UGT2B17O75795 530 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 SOX30O94993 753 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 GADD45GO95257 159 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 ALBP02768 609 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 HEXBP07686 556 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 THBS1P07996 1170 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 IGFBP5P24593 272 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 ETV5P41161 510 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 TSPAN7P41732 249 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 RNF144AP50876 292 aaPredicted RBP13.02□□□□□ -0.32
GPNMB-203ENST00000409458 EEF1A1P68104 462 aaKnown RBP13.02□□□□□ -0.32
GPNMB-203ENST00000409458 ADARB1P78563 741 aaKnown RBP13.02□□□□□ -0.32
GPNMB-203ENST00000409458 FLYWCH1Q4VC44 716 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 LIN52Q52LA3 116 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 KDM4DQ6B0I6 523 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 UGT2A3Q6UWM9 527 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 DHRSXQ8N5I4 330 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 OR10G2Q8NGC3 310 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 DAZLQ92904 295 aaKnown RBP13.02□□□□□ -0.32
GPNMB-203ENST00000409458 GATA6Q92908 595 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 DHRS1Q96LJ7 313 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 RDH12Q96NR8 316 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 SLC46A1Q96NT5 459 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 SPSB2Q99619 263 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 CMKLR1Q99788 373 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 NUDT9Q9BW91 350 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 CACYBPQ9HB71 228 aaKnown RBP13.02□□□□□ -0.32
GPNMB-203ENST00000409458 FAM86C1Q9NVL1 165 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 KIF17Q9P2E2 1029 aa13.02□□□□□ -0.32
GPNMB-203ENST00000409458 NCDNQ9UBB6 729 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms