RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 GCM2O75603 506 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-204ENST00000409441 CYC1P08574 325 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 C1QTNF9P0C862 333 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 PIGAP37287 484 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 FEN1P39748 380 aaKnown RBP12.49□□□□□ -0.41
LIMS1-204ENST00000409441 FRKP42685 505 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-204ENST00000409441 PRIM2P49643 509 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 CRYBA2P53672 197 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 CDK6Q00534 326 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 EEF1A2Q05639 463 aaKnown RBP12.49□□□□□ -0.41
LIMS1-204ENST00000409441 SRSF6Q13247 344 aaKnown RBP12.49□□□□□ -0.41
LIMS1-204ENST00000409441 BIKQ13323 160 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 SERTAD2Q14140 314 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 ZNF750Q32MQ0 723 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 IFI44LQ53G44 452 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 CRB2Q5IJ48 1285 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 COX20Q5RI15 118 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 C6orf141Q5SZD1 244 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 GALNT10Q86SR1 603 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 CHDHQ8NE62 594 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-204ENST00000409441 ZNF420Q8TAQ5 688 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-204ENST00000409441 TMIGD2Q96BF3 282 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 CNRIP1Q96F85 164 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-204ENST00000409441 RBM18Q96H35 190 aaKnown RBP12.49□□□□□ -0.41
LIMS1-204ENST00000409441 TPD52L3Q96J77 140 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 MPP4Q96JB8 637 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 ZNF681Q96N22 645 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 ANGPT4Q9Y264 503 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 SAMHD1Q9Y3Z3 626 aaKnown RBP12.49□□□□□ -0.41
LIMS1-204ENST00000409441 PCDHGB3Q9Y5G1 929 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 U3KQV3 271 aa12.49□□□□□ -0.41
LIMS1-204ENST00000409441 A0A1W2PS29 197 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 TCRBV16S1A1N1A0A5B0 115 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 MYO1GB0I1T2 1018 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 BCKDKO14874 412 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 ADAMDEC1O15204 470 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 IGHEP01854 428 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 CCDC159P0C7I6 412 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 SLC35E2P0CK97 266 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 PORP16435 677 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 ITGA2P17301 1181 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 CSNK2A2P19784 350 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 PRKACGP22612 351 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 MMP11P24347 488 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 CRHBPP24387 322 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 ELK4P28324 431 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 OTX2P32243 289 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 SOAT1P35610 550 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 EIF2S3P41091 472 aaKnown RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 DAPP51397 102 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 DSTNP60981 165 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 ISL1P61371 349 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 IGLV3-21P80748 117 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 PPP1R8Q12972 351 aaKnown RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 MLC1Q15049 377 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 SAXO2Q658L1 398 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 FAHD1Q6P587 224 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 TMEM205Q6UW68 189 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 LANCL3Q6ZV70 420 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 KCTD8Q6ZWB6 473 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 ANKRD37Q7Z713 158 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 RNF130Q86XS8 419 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 ERI1Q8IV48 349 aaKnown RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 C7orf57Q8NEG2 295 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 NFKBIDQ8NI38 313 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 MAL2Q969L2 176 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 ZNF566Q969W8 418 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 NEURL3Q96EH8 262 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 MESP1Q9BRJ9 268 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 ACSS1Q9NUB1 689 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 GIMAP4Q9NUV9 329 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 THUMPD1Q9NXG2 353 aaKnown RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 PDP1Q9P0J1 537 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 SCN2AQ99250 2005 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 TMEM229AB2RXF0 380 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 EFSO43281 561 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 IFNA16P05015 189 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 CPMP14384 443 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 TNNI3P19429 210 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 MPIP34949 423 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 MAGEA8P43361 318 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 PCBP3P57721 371 aaKnown RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 CD47Q08722 323 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 ANKRD34AQ69YU3 496 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 UNQ6494/PRO21346Q6UXR6 183 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 PPP1R32Q7Z5V6 425 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 CYP4Z1Q86W10 505 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 CCDC116Q8IYX3 515 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 SAMD14Q8IZD0 417 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 NACC2Q96BF6 587 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 C8orf44Q96CB5 159 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 ZBED6CLQ96FA7 236 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 MAGED4Q96JG8 741 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 BBS4Q96RK4 519 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 CCNL2Q96S94 520 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 CXorf36Q9H7Y0 433 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 PNO1Q9NRX1 252 aaKnown RBP12.48□□□□□ -0.41
LIMS1-204ENST00000409441 ENTPD4Q9Y227 616 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 HS3ST3B1Q9Y662 390 aa12.48□□□□□ -0.41
LIMS1-204ENST00000409441 CCDC88CQ9P219 2028 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms