RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SLC22A10Q63ZE4 541 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 ARHGAP11AQ6P4F7 1023 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF709Q8N972 641 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 CENPNQ96H22 339 aaPredicted RBP6.9□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF419Q96HQ0 510 aaPredicted RBP6.9□□□□□ -1.3
SCN9A-202ENST00000409435 TREX2Q9BQ50 279 aaPredicted RBP6.9□□□□□ -1.3
SCN9A-202ENST00000409435 SYT4Q9H2B2 425 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 PROCRQ9UNN8 238 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 MED31Q9Y3C7 131 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 FEZF1A0PJY2 475 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 A1L4Q6 167 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 INMT-MINDY4F8WBC2 141 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 J3QRK9 145 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 SCGB1D1O95968 90 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 SLC1A3P43003 542 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 STC1P52823 247 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 MVKQ03426 396 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 ALG1LQ6GMV1 187 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 PGAP1Q75T13 922 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 WFDC8Q8IUA0 241 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 BEST4Q8NFU0 473 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 OR51Q1Q8NH59 317 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 GRHL3Q8TE85 626 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 SGCDQ92629 289 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 FBXL8Q96CD0 374 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 SLC7A6OSQ96CW6 309 aaPredicted RBP6.9□□□□□ -1.3
SCN9A-202ENST00000409435 KCTD7Q96MP8 289 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 TRIB1Q96RU8 372 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 SLC30A2Q9BRI3 323 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 DCSTAMPQ9H295 470 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 CD320Q9NPF0 282 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 VPS29Q9UBQ0 182 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 TFR2Q9UP52 801 aa6.9□□□□□ -1.3
SCN9A-202ENST00000409435 ZMPSTE24O75844 475 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 SNAPINO95295 136 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 C1GALT1C1LP0DN25 315 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 CD79AP11912 226 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 FCGR2AP12318 317 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 CD36P16671 472 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 GABRA3P34903 492 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 NXPH1P58417 271 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 TAS2R39P59534 338 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 IL11RAQ14626 422 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 SYT16Q17RD7 645 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 CISD2Q8N5K1 135 aaKnown RBP6.9□□□□□ -1.31
SCN9A-202ENST00000409435 GATSQ8NAP1 163 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 SLC39A7Q92504 469 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 ARL11Q969Q4 196 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 TXN2Q99757 166 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 SAMD10Q9BYL1 202 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 PPIL3Q9H2H8 161 aaKnown RBP6.9□□□□□ -1.31
SCN9A-202ENST00000409435 DHCR7Q9UBM7 475 aaKnown RBP6.9□□□□□ -1.31
SCN9A-202ENST00000409435 DOCK1Q14185 1865 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 NPIPB15A6NHN6 443 aaPredicted RBP6.9□□□□□ -1.31
SCN9A-202ENST00000409435 HCKP08631 526 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 ATXN1LP0C7T5 689 aaKnown RBP6.9□□□□□ -1.31
SCN9A-202ENST00000409435 NAT1P18440 290 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 EIF1AXP47813 144 aaKnown RBP6.9□□□□□ -1.31
SCN9A-202ENST00000409435 NFKB2Q00653 900 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 NNATQ16517 81 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 TIGD6Q17RP2 521 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 TMEM44Q2T9K0 475 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 PLEKHN1Q494U1 663 aaPredicted RBP6.9□□□□□ -1.31
SCN9A-202ENST00000409435 LILRA6Q6PI73 481 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 FAM198BQ6UWH4 519 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 TMEM92Q6UXU6 159 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 POGLUT1Q8NBL1 392 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 MAELQ96JY0 434 aaKnown RBP6.9□□□□□ -1.31
SCN9A-202ENST00000409435 COMMD4Q9H0A8 199 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 ANKRD10Q9NXR5 420 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 PDP1Q9P0J1 537 aaPredicted RBP6.9□□□□□ -1.31
SCN9A-202ENST00000409435 IKZF2Q9UKS7 526 aa6.9□□□□□ -1.31
SCN9A-202ENST00000409435 GPIP06744 558 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 UGT2B7P16662 529 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 DDCP20711 480 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 CDKN2BP42772 138 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 VEGFCP49767 419 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 NAGLUP54802 743 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 DSTNP60981 165 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 RNF4P78317 190 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 GPR18Q14330 331 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 RPS19BP1Q86WX3 136 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 OR5AR1Q8NGP9 310 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 NR4A3Q92570 626 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PDXPQ96GD0 296 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 UBL7Q96S82 380 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 NPLQ9BXD5 320 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 HOXD1Q9GZZ0 328 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 TMEM185BQ9H7F4 350 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 FKRPQ9H9S5 495 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ATP23Q9Y6H3 246 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 C13orf42A0A1B0GVH6 325 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PMS2P1A4D2B8 440 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 UBFD1O14562 309 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 HRO43593 1189 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF254O75437 659 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 LIPCP11150 499 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 IDO1P14902 403 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 UGT2B10P36537 528 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PPP2CBP62714 309 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms