RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SGCGQ13326 291 aa11.27□□□□□ -0.61
HMGB1-206ENST00000405805 HYAL4Q2M3T9 481 aa11.27□□□□□ -0.61
HMGB1-206ENST00000405805 LHX8Q68G74 356 aa11.27□□□□□ -0.61
HMGB1-206ENST00000405805 OR8J2Q8NGG1 315 aa11.27□□□□□ -0.61
HMGB1-206ENST00000405805 GALNT9Q9HCQ5 603 aa11.27□□□□□ -0.61
HMGB1-206ENST00000405805 ENAMQ9NRM1 1142 aa11.27□□□□□ -0.61
HMGB1-206ENST00000405805 ERVW-1Q9UQF0 538 aa11.27□□□□□ -0.61
HMGB1-206ENST00000405805 ASB4Q9Y574 426 aa11.27□□□□□ -0.61
HMGB1-206ENST00000405805 PCDHGB1Q9Y5G3 927 aa11.27□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF780BQ9Y6R6 833 aa11.27□□□□□ -0.61
HMGB1-206ENST00000405805 ABHD14A-ACY1A0A1B0GW23 586 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF98A6NK75 572 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 WRBO00258 174 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 YKT6O15498 198 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 NDUFS4O43181 175 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 GATBO75879 557 aaKnown RBP11.26□□□□□ -0.61
HMGB1-206ENST00000405805 PAK4O96013 591 aaPredicted RBP11.26□□□□□ -0.61
HMGB1-206ENST00000405805 LAMP2P13473 410 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 PNLIPRP1P54315 467 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 RPS25P62851 125 aaKnown RBP11.26□□□□□ -0.61
HMGB1-206ENST00000405805 FADDQ13158 208 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 ZDHHC20Q5W0Z9 365 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 PODNL1Q6PEZ8 512 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 SMPDL3AQ92484 453 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 RIPOR3Q96MK2 946 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF471Q9BX82 626 aaPredicted RBP11.26□□□□□ -0.61
HMGB1-206ENST00000405805 SLC46A2Q9BY10 475 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 ACER3Q9NUN7 267 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 ZNF175Q9Y473 711 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 ANK1P16157 1881 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 OR2AT4A6NND4 320 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 PPM1DO15297 605 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 ARPC5O15511 151 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 RP2O75695 350 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 MTNR1AP48039 350 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 HTRA4P83105 476 aaPredicted RBP11.26□□□□□ -0.61
HMGB1-206ENST00000405805 SLC25A25Q6KCM7 469 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 SLC27A4Q6P1M0 643 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 GAREM2Q75VX8 874 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 NUDT13Q86X67 352 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 CALHM3Q86XJ0 350 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 TOMM5Q8N4H5 51 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 L3MBTL4Q8NA19 623 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 FAM98AQ8NCA5 519 aaKnown RBP11.26□□□□□ -0.61
HMGB1-206ENST00000405805 APH1BQ8WW43 257 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 ECHDC3Q96DC8 303 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 NUS1Q96E22 293 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 RNF31Q96EP0 1072 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 TMEM168Q9H0V1 697 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 DPAGT1Q9H3H5 408 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 TDP1Q9NUW8 608 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 PLXNA1Q9UIW2 1896 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 A0A1W2PPL8 197 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 F8W036 122 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 TGM5O43548 720 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 HYAL3O43820 417 aaPredicted RBP11.26□□□□□ -0.61
HMGB1-206ENST00000405805 STX11O75558 287 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 UQCRC2P22695 453 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 CTBP2P56545 445 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 BLOC1S1P78537 153 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 ADAM15Q13444 863 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 NXPE4Q6UWF7 544 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 SLC16A13Q7RTY0 426 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 IRF7Q92985 503 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 TET1Q8NFU7 2136 aa11.26□□□□□ -0.61
HMGB1-206ENST00000405805 LRRC72A6NJI9 287 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 CSO75390 466 aaKnown RBP11.25□□□□□ -0.61
HMGB1-206ENST00000405805 ALDOBP05062 364 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 PPM1AP35813 382 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 IFITM2Q01629 132 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 RBBP4Q09028 425 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 MRPL58Q14197 206 aaKnown RBP11.25□□□□□ -0.61
HMGB1-206ENST00000405805 LARS2Q15031 903 aaKnown RBP11.25□□□□□ -0.61
HMGB1-206ENST00000405805 LACC1Q8IV20 430 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 OR4K3Q96R72 315 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 TRAF4Q9BUZ4 470 aaPredicted RBP11.25□□□□□ -0.61
HMGB1-206ENST00000405805 C1QTNF6Q9BXI9 259 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 BHLHE41Q9C0J9 482 aaPredicted RBP11.25□□□□□ -0.61
HMGB1-206ENST00000405805 IGFLR1Q9H665 355 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 DMRT3Q9NQL9 472 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 NUDT15Q9NV35 164 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 BRCA1P38398 1863 aaKnown RBP11.25□□□□□ -0.61
HMGB1-206ENST00000405805 K7ESM1 405 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 FABP1P07148 127 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 MPC1LP0DKB6 136 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 GNSP15586 552 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 LSM11P83369 360 aaKnown RBP eCLIP11.25□□□□□ -0.61
HMGB1-206ENST00000405805 PRKCDQ05655 676 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 SP140Q13342 867 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 YAF2Q8IY57 180 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 FIBINQ8TAL6 211 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 HCAR2Q8TDS4 363 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 OR8D1Q8WZ84 308 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 TMEM106CQ9BVX2 250 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 TMEM45AQ9NWC5 275 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 B3GNT2Q9NY97 397 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 DEC1Q9P2X7 70 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 BACE2Q9Y5Z0 518 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 ALG5Q9Y673 324 aa11.25□□□□□ -0.61
HMGB1-206ENST00000405805 PSMD9O00233 223 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms