RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 NAPSAO96009 420 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 INSP01308 110 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 IGLV7-43P04211 117 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 CD74P04233 296 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 SNRPCP09234 159 aaKnown RBP-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 CCDC159P0C7I6 412 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 OR12D1P0DN82 309 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 DESP17661 470 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 PDE6GP18545 87 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 EEF1GP26641 437 aaKnown RBP-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 PSMB4P28070 264 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 CD1BP29016 333 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 HOXD13P35453 343 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 DLSTP36957 453 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 RPL13AP40429 203 aaKnown RBP-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 CCR2P41597 374 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 CDKN1BP46527 198 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 GABRB2P47870 512 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 ALDH3B2P48448 385 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 SERPINB9P50453 376 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 METAP1P53582 386 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 GIT2Q14161 759 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 SMC1AQ14683 1233 aaKnown RBP-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 DEFB135Q30KP9 77 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 DEFB110Q30KQ9 67 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 CEACAM21Q3KPI0 293 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 TIGITQ495A1 244 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 GORABQ5T7V8 394 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 ATP1A1-AS1Q5TC04 95 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 FAM222AQ5U5X8 452 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 TMEM211Q6ICI0 200 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 TPRG1Q6ZUI0 275 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 RRAGAQ7L523 313 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 Q86TA4 180 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 C14orf37Q86TY3 774 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 NUDT13Q86X67 352 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 DOLPP1Q86YN1 238 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 CEP97Q8IW35 865 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 TCEANCQ8N8B7 351 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 ZNRF1Q8ND25 227 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 DEFB104AQ8WTQ1 72 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 AFG1LQ8WV93 481 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 FAM46BQ96A09 425 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 ZNF707Q96C28 371 aaPredicted RBP-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 HAVCR1Q96D42 359 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 SMARCD1Q96GM5 515 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 LINC01600Q96MT4 127 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 RAD9AQ99638 391 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 CBWD1Q9BRT8 395 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 FUZQ9BT04 418 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 ZSCAN5AQ9BUG6 496 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 HEMGNQ9BXL5 484 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 CHRNA10Q9GZZ6 450 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 DPEP3Q9H4B8 488 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 AMBNQ9NP70 447 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 NGBQ9NPG2 151 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 IMPAD1Q9NX62 359 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 SLCO1C1Q9NYB5 712 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 RNF24Q9Y225 148 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 PDE10AQ9Y233 779 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 ITM2BQ9Y287 266 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 GDAQ9Y2T3 454 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 RBMX2Q9Y388 322 aaKnown RBP-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 FLVCR1Q9Y5Y0 555 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 CLIC4Q9Y696 253 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 U3KQ87 197 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 SPACA6W5XKT8 324 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 DOCK4Q8N1I0 1966 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 ATP10BO94823 1461 aa-1.38□□□□□ -2.63
RNU6-540P-201ENST00000384622 MAP3K19Q56UN5 1328 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 USP42Q9H9J4 1324 aaKnown RBP-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 SPATA31E1Q6ZUB1 1445 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 INTS1Q8N201 2190 aaKnown RBP-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 IGHV3-64DA0A0J9YX35 117 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 LINC00959A0A1B0GUT2 108 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 HYKKA2RU49 373 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 ZNF850A8MQ14 1090 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 GPR31O00270 319 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 FCN1O00602 326 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 ATP2A1O14983 1001 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 KPNA5O15131 536 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 EFNA2O43921 213 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 SH3BP5O60239 455 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 NDUFS6O75380 124 aaKnown RBP-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 FRAT2O75474 233 aaPredicted RBP-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 JRKO75564 520 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 CDRT1O95170 752 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 TBX18O95935 607 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 IGLV3-27P01718 113 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 POLR2MP0CAP2 368 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 NR2F1P10589 423 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 HTR1EP28566 365 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 PTPN4P29074 926 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 EEF1DP29692 281 aaKnown RBP-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 HOXA6P31267 233 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 GNAQP50148 359 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 LIMK1P53667 647 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 MFAP1P55081 439 aaKnown RBP-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 MFAP4P55083 255 aa-1.39□□□□□ -2.63
RNU6-540P-201ENST00000384622 ST8SIA6P61647 398 aa-1.39□□□□□ -2.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms