RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 YOD1Q5VVQ6 348 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 AP1ARQ63HQ0 302 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF836Q6ZNA1 936 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 Q6ZPB1 254 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 QSOX2Q6ZRP7 698 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 COX15Q7KZN9 410 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 SLITRK4Q8IW52 837 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF619Q8N2I2 560 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 TSPAN14Q8NG11 270 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 C16orf52Q8NHV5 167 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 SLC7A13Q8TCU3 470 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 PTPMT1Q8WUK0 201 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 FBLIM1Q8WUP2 373 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 OR6C1Q96RD1 312 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 MRPS26Q9BYN8 205 aaKnown RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 FANCEQ9HB96 536 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 CTPS2Q9NRF8 586 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 SIDT1Q9NXL6 827 aaKnown RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 CDC14AQ9UNH5 594 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 HCN4Q9Y3Q4 1203 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 MMACHCQ9Y4U1 282 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 COL5A1P20908 1838 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 COL27A1Q8IZC6 1860 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 ARRDC5A6NEK1 342 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 BRINP1O60477 761 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 GASTP01350 101 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 LINGO3P0C6S8 592 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 ANXA8P13928 327 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 POU2F1P14859 743 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 IL7RP16871 459 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 GALNSP34059 522 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 TRHRP34981 398 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 FOXL2P58012 376 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 POU6F2P78424 691 aaPredicted RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 HOXC5Q00444 222 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 PLAURQ03405 335 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 MEP1AQ16819 746 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 MINDY4Q4G0A6 757 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 FGD3Q5JSP0 725 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 ARHGAP40Q5TG30 622 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 RHBDD2Q6NTF9 364 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 BMP8AQ7Z5Y6 402 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 LAPTM4BQ86VI4 370 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF321PQ8N8H1 164 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 ZSCAN1Q8NBB4 408 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 AQP11Q8NBQ7 271 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 PRRC1Q96M27 445 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 OR10A5Q9H207 317 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 PAPOLBQ9NRJ5 636 aaKnown RBP12.8□□□□□ -0.36
PTPRF-202ENST00000372405 CTSFQ9UBX1 484 aa12.8□□□□□ -0.36
PTPRF-202ENST00000372405 A0A1W2PRQ8 180 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 C17orf105B2RV13 164 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 NTN3O00634 580 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-202ENST00000372405 PRAMEF2O60811 474 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 UGT2B11O75310 529 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 BCAS1O75363 584 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-202ENST00000372405 CLPTM1O96005 669 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 CT45A8P0DMV1 189 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 CT45A9P0DMV2 189 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 RNF144AP50876 292 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-202ENST00000372405 LSM11P83369 360 aaKnown RBP eCLIP12.79□□□□□ -0.36
PTPRF-202ENST00000372405 ACY1Q03154 408 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 DGCR6Q14129 220 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 KEAP1Q14145 624 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 CT45A2Q5DJT8 189 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 PWWP2BQ6NUJ5 590 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 LSRQ86X29 649 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-202ENST00000372405 PEX5LQ8IYB4 626 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 TAGAPQ8N103 731 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 GTPBP3Q969Y2 492 aaKnown RBP12.79□□□□□ -0.36
PTPRF-202ENST00000372405 ZNF578Q96N58 590 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-202ENST00000372405 PITX2Q99697 317 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 AASSQ9UDR5 926 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 NTNG1Q9Y2I2 539 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 IFT52Q9Y366 437 aa12.79□□□□□ -0.36
PTPRF-202ENST00000372405 RALGAPA1Q6GYQ0 2036 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 TCRBV16S1A1N1A0A5B0 115 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 SH3PXD2BA1X283 911 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 UGT2B17O75795 530 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 AK1P00568 194 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 THBS1P07996 1170 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 CDH2P19022 906 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-202ENST00000372405 AGXTP21549 392 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 RYKP34925 604 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 RPP38P78345 283 aaKnown RBP12.78□□□□□ -0.36
PTPRF-202ENST00000372405 IL18R1Q13478 541 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 NNATQ16517 81 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 DCST1Q5T197 706 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 MFSD4BQ5TF39 518 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 LAIR1Q6GTX8 287 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 B3GNT8Q7Z7M8 397 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 PRSS58Q8IYP2 241 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 DIO2Q92813 273 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 SENP5Q96HI0 755 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-202ENST00000372405 PELOQ9BRX2 385 aaKnown RBP12.78□□□□□ -0.36
PTPRF-202ENST00000372405 ITPAQ9BY32 194 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 ING2Q9H160 280 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 APMAPQ9HDC9 416 aa12.78□□□□□ -0.36
PTPRF-202ENST00000372405 PNO1Q9NRX1 252 aaKnown RBP12.78□□□□□ -0.36
PTPRF-202ENST00000372405 SRPK3Q9UPE1 567 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms