RNA–Protein interactions for RNA: ENST00000356800.6

SMARCD3-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 1,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-202ENST00000356800 C9orf40Q8IXQ3 194 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 GEMIN6Q8WXD5 167 aaKnown RBP16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 RMND5BQ96G75 393 aaPredicted RBP16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 NAF1Q96HR8 494 aaKnown RBP16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 VPS50Q96JG6 964 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 ART5Q96L15 291 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 SLC29A1Q99808 456 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 SPATA5L1Q9BVQ7 753 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 DLL3Q9NYJ7 618 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 MKLN1Q9UL63 735 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 GPR55Q9Y2T6 319 aaPredicted RBP16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 SOCS2O14508 198 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 GFRA3O60609 400 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 RASAL1O95294 804 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 IGKV1D-16P01601 117 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 TRHRP34981 398 aaPredicted RBP16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 HSPA13P48723 471 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 FIGNL1Q6PIW4 674 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 PAPD4Q6PIY7 484 aaKnown RBP16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 TSEN54Q7Z6J9 526 aaKnown RBP16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 ZAR1Q86SH2 424 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 COMTD1Q86VU5 262 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 GALNT4Q8N4A0 578 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 CBR4Q8N4T8 237 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 APOBEC4Q8WW27 367 aaKnown RBP16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 ADAMTS14Q8WXS8 1223 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 ADIPOR1Q96A54 375 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 ZNF597Q96LX8 424 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 SAP130Q9H0E3 1048 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 THSD1Q9NS62 852 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 ZNF223Q9UK11 482 aaPredicted RBP16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 BAG5Q9UL15 447 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 PPIEQ9UNP9 301 aaKnown RBP16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 ABCG2Q9UNQ0 655 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 WDR45Q9Y484 360 aa16.81■□□□□ 0.28
SMARCD3-202ENST00000356800 AHCTF1Q8WYP5 2266 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 LOC102723996A0A087X1L8 192 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 GNGT2O14610 69 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 SEC24DO94855 1032 aaPredicted RBP16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 AK1P00568 194 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 ZNF23P17027 643 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 TCN2P20062 427 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 KCNJ5P48544 419 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 GABREP78334 506 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 HPCAP84074 193 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 EBPQ15125 230 aaKnown RBP16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 AP1ARQ63HQ0 302 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 OR2T5Q6IEZ7 315 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 SVOPLQ8N434 492 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 APCDD1LQ8NCL9 501 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 B3GNT7Q8NFL0 401 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 OR2T29Q8NH02 315 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 SPPL2AQ8TCT8 520 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 TMBIM1Q969X1 311 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 SEMA4CQ9C0C4 833 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 B3GNT4Q9C0J1 378 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 POLR1BQ9H9Y6 1135 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 COPS7AQ9UBW8 275 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 SEC14L3Q9UDX4 400 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 LRCH1Q9Y2L9 728 aa16.8■□□□□ 0.28
SMARCD3-202ENST00000356800 CENPVL1A0A0U1RR11 272 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 TTC36A6NLP5 189 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 hCG_2039718K7EN88 272 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 PDLIM1O00151 329 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 STX11O75558 287 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 EPPINO95925 133 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 RAB40ALP0C0E4 278 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 PPICP45877 212 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 OR1E2P47887 323 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 RPS18P62269 152 aaKnown RBP16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 KCNC4Q03721 635 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 PUM1Q14671 1186 aaKnown RBP eCLIP16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 NRF1Q16656 503 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 ZDHHC13Q8IUH4 622 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 ESX1Q8N693 406 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 LMF1Q96S06 567 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 NXF5Q9H1B4 397 aaKnown RBP16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 MTHFD2LQ9H903 347 aaPredicted RBP16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 Q9N2J8 555 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 NDUFAF4Q9P032 175 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 C19orf25Q9UFG5 118 aaPredicted RBP16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 KCNE5Q9UJ90 142 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 CFL2Q9Y281 166 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 HS3ST3B1Q9Y662 390 aa16.79■□□□□ 0.28
SMARCD3-202ENST00000356800 TERTO14746 1132 aaKnown RBP16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 KIAA0513O60268 411 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 ALPPP05187 535 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 FESP07332 822 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 ITGA2P17301 1181 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 PIGAP37287 484 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 FOLR3P41439 243 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 PCOLCEQ15113 449 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 GPR68Q15743 365 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 VRK2Q86Y07 508 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 NLGN4XQ8N0W4 816 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 NLGN4YQ8NFZ3 816 aaPredicted RBP16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 ZNF570Q96NI8 536 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 ZNF347Q96SE7 839 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 LPAR4Q99677 370 aa16.78■□□□□ 0.28
SMARCD3-202ENST00000356800 WFDC6Q9BQY6 131 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms