RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 OR6V1Q8N148 313 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 RHOXF1Q8NHV9 184 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 ARHGAP39Q9C0H5 1083 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 MTHFD2LQ9H903 347 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 B4GALT5O43286 388 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 UPP1Q16831 310 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 GPR157Q5UAW9 335 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 PPP2R2DQ66LE6 453 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 C6orf120Q7Z4R8 191 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 KLBQ86Z14 1044 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 FAM83FQ8NEG4 500 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 STEAP2Q8NFT2 490 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 ZNF705GA8MUZ8 300 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 SDC3O75056 442 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 STSP08842 583 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 VEGFAP15692 232 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 RPS13P62277 151 aaKnown RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 KIAA0319Q5VV43 1072 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 EEF1DP3Q658K8 133 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 MAMDC2Q7Z304 686 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 OR5L2Q8NGL0 311 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 GAL3ST1Q99999 423 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 MIR1-1HGQ9H1L0 117 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 NSUN3Q9H649 340 aaKnown RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 B3GNT2Q9NY97 397 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 SARDHQ9UL12 918 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 CACNA1IQ9P0X4 2223 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 VSTM2BA6NLU5 285 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 SNCGO76070 127 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 RAB3DO95716 219 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 IMPA1P29218 277 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 CXCL9Q07325 125 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 OR5W2Q8NH69 310 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 HAS2Q92819 552 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 SLC30A7Q8NEW0 376 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 OR52N2Q8NGI0 321 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 TFGQ92734 400 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 GMPR2Q9P2T1 348 aaKnown RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 SAP18O00422 153 aaKnown RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 IMPA2O14732 288 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 NIPAL4Q0D2K0 466 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 ZNF266Q14584 549 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 ZNF695Q8IW36 515 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 SULF2Q8IWU5 870 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 NANOS1Q8WY41 292 aaKnown RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 RTP4Q96DX8 246 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 RBMXL1Q96E39 390 aaKnown RBP12.66□□□□□ -0.38
COL6A3-202ENST00000347401 TXNDC15Q96J42 360 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 MYADMQ96S97 322 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 FEVQ99581 238 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 METTL7AQ9H8H3 244 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 C1orf123Q9NWV4 160 aa12.66□□□□□ -0.38
COL6A3-202ENST00000347401 CD8B2A6NJW9 211 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 H7C1Q1 480 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 RNASET2O00584 256 aaKnown RBP12.65□□□□□ -0.38
COL6A3-202ENST00000347401 CSTAP01040 98 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 CD8BP10966 210 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 NFATC2Q13469 925 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 SLC10A6Q3KNW5 377 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 USP51Q70EK9 711 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 OR7G3Q8NG95 312 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 DPF1Q92782 380 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 DOPEY2Q9Y3R5 2298 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 TMEM233B4DJY2 109 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 LALBAP00709 142 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 OPN1SWP03999 348 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 LSSP48449 732 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 TGM4P49221 684 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 HIPK2Q9H2X6 1198 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 ZNF286AQ9HBT8 521 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 E9PI62 339 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 ANKRD28O15084 1053 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 PRAMEF11O60813 436 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 ZNF254O75437 659 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 KCNE1P15382 129 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 PGCP20142 388 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 GRM2Q14416 872 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 C11orf91Q3C1V1 193 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 HIST2H3PS2Q5TEC6 136 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 DPY19L4Q7Z388 723 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 KANSL1Q7Z3B3 1105 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 CD163Q86VB7 1156 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 JSRP1Q96MG2 331 aaPredicted RBP12.65□□□□□ -0.38
COL6A3-202ENST00000347401 CACFD1Q9UGQ2 172 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 ANKRD36A6QL64 1941 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 ACRV1P26436 265 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 IL1R2P27930 398 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 CACUL1Q86Y37 369 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 TREML1Q86YW5 311 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 LIX1LQ8IVB5 337 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 TSSK2Q96PF2 358 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 PINK1Q9BXM7 581 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 IGLV3-22A0A075B6J6 115 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 RPS17P08708 135 aaKnown RBP12.65□□□□□ -0.38
COL6A3-202ENST00000347401 METTL15P1P0C7V9 234 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 DAP3P51398 398 aaKnown RBP12.65□□□□□ -0.38
COL6A3-202ENST00000347401 P4HA3Q7Z4N8 544 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 GKN2Q86XP6 184 aa12.65□□□□□ -0.38
COL6A3-202ENST00000347401 IMP4Q96G21 291 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms