RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 PRTGQ2VWP7 1150 aa12□□□□□ -0.49
CLK3-201ENST00000345005 CCBE1Q6UXH8 406 aaPredicted RBP12□□□□□ -0.49
CLK3-201ENST00000345005 SZRD1Q7Z422 152 aa12□□□□□ -0.49
CLK3-201ENST00000345005 LRRC25Q8N386 305 aaPredicted RBP12□□□□□ -0.49
CLK3-201ENST00000345005 ELP4Q96EB1 424 aa12□□□□□ -0.49
CLK3-201ENST00000345005 AHCYL2Q96HN2 611 aaKnown RBP12□□□□□ -0.49
CLK3-201ENST00000345005 CEP19Q96LK0 163 aa12□□□□□ -0.49
CLK3-201ENST00000345005 TGM7Q96PF1 710 aa12□□□□□ -0.49
CLK3-201ENST00000345005 CDADC1Q9BWV3 514 aa12□□□□□ -0.49
CLK3-201ENST00000345005 ALOXE3Q9BYJ1 711 aa12□□□□□ -0.49
CLK3-201ENST00000345005 OR51I1Q9H343 314 aa12□□□□□ -0.49
CLK3-201ENST00000345005 ZNF556Q9HAH1 456 aa12□□□□□ -0.49
CLK3-201ENST00000345005 RASSF1Q9NS23 344 aa12□□□□□ -0.49
CLK3-201ENST00000345005 STARD5Q9NSY2 213 aa12□□□□□ -0.49
CLK3-201ENST00000345005 ZNF221Q9UK13 617 aa12□□□□□ -0.49
CLK3-201ENST00000345005 PLCL2Q9UPR0 1127 aa12□□□□□ -0.49
CLK3-201ENST00000345005 ZNF860A6NHJ4 632 aa12□□□□□ -0.49
CLK3-201ENST00000345005 M0R082 166 aa12□□□□□ -0.49
CLK3-201ENST00000345005 HCRTR1O43613 425 aa12□□□□□ -0.49
CLK3-201ENST00000345005 UGT2B17O75795 530 aa12□□□□□ -0.49
CLK3-201ENST00000345005 DBTP11182 482 aaKnown RBP12□□□□□ -0.49
CLK3-201ENST00000345005 GLB1P16278 677 aa12□□□□□ -0.49
CLK3-201ENST00000345005 GADD45AP24522 165 aa12□□□□□ -0.49
CLK3-201ENST00000345005 PPP2R1BP30154 601 aa12□□□□□ -0.49
CLK3-201ENST00000345005 MLLT3P42568 568 aaPredicted RBP12□□□□□ -0.49
CLK3-201ENST00000345005 VLDLRP98155 873 aa12□□□□□ -0.49
CLK3-201ENST00000345005 CSTF1Q05048 431 aaKnown RBP12□□□□□ -0.49
CLK3-201ENST00000345005 SLC13A2Q13183 592 aa12□□□□□ -0.49
CLK3-201ENST00000345005 GNA13Q14344 377 aa12□□□□□ -0.49
CLK3-201ENST00000345005 DEFB110Q30KQ9 67 aa12□□□□□ -0.49
CLK3-201ENST00000345005 IFI44LQ53G44 452 aa12□□□□□ -0.49
CLK3-201ENST00000345005 RSBN1Q5VWQ0 802 aaPredicted RBP12□□□□□ -0.49
CLK3-201ENST00000345005 TMEM107Q6UX40 140 aa12□□□□□ -0.49
CLK3-201ENST00000345005 CARFQ8N187 725 aa12□□□□□ -0.49
CLK3-201ENST00000345005 APH1BQ8WW43 257 aa12□□□□□ -0.49
CLK3-201ENST00000345005 GGHQ92820 318 aa12□□□□□ -0.49
CLK3-201ENST00000345005 RPL3LQ92901 407 aaKnown RBP12□□□□□ -0.49
CLK3-201ENST00000345005 RAB8BQ92930 207 aa12□□□□□ -0.49
CLK3-201ENST00000345005 C7orf34Q96L11 122 aa12□□□□□ -0.49
CLK3-201ENST00000345005 CDCA4Q9BXL8 241 aa12□□□□□ -0.49
CLK3-201ENST00000345005 PDE7BQ9NP56 450 aa12□□□□□ -0.49
CLK3-201ENST00000345005 P2RX2Q9UBL9 471 aa12□□□□□ -0.49
CLK3-201ENST00000345005 TRPC4Q9UBN4 977 aa12□□□□□ -0.49
CLK3-201ENST00000345005 POU2F3Q9UKI9 436 aa12□□□□□ -0.49
CLK3-201ENST00000345005 TECTAO75443 2155 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 TMEM229AB2RXF0 380 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 hCG_2039718K7EN88 272 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 DNAJB6O75190 326 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 KCNK2O95069 426 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 BCHEP06276 602 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 OR12D1P0DN82 309 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 ALPPL2P10696 532 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 CPMP14384 443 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 M6PRP20645 277 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 RGS6P49758 472 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 PRKAG1P54619 331 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 SIM1P81133 766 aaPredicted RBP11.99□□□□□ -0.49
CLK3-201ENST00000345005 CHRNEQ04844 493 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 GPR19Q15760 415 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 SMN1Q16637 294 aaKnown RBP11.99□□□□□ -0.49
CLK3-201ENST00000345005 TCTE1Q5JU00 501 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 LAIR1Q6GTX8 287 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 DESI1Q6ICB0 168 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 PRSS41Q7RTY9 318 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 CCDC190Q86UF4 302 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 SNX29P2Q8IUI4 249 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 PLXDC1Q8IUK5 500 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 C1orf210Q8IVY1 113 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 SLC35F3Q8IY50 421 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 CA13Q8N1Q1 262 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 ARHGEF39Q8N4T4 335 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 NUP43Q8NFH3 380 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 OR9A2Q8NGT5 310 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 SPPL2AQ8TCT8 520 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 XAGE5Q8WWM1 108 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 TMEM19Q96HH6 336 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 ZNF285Q96NJ3 590 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 ZNF607Q96SK3 696 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 SERHL2Q9H4I8 314 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 ZBTB20Q9HC78 741 aaPredicted RBP11.99□□□□□ -0.49
CLK3-201ENST00000345005 POLE4Q9NR33 117 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 SOHLH2Q9NX45 425 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 NTMQ9P121 344 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 PILRBQ9UKJ0 227 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 RAB23Q9ULC3 237 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.99□□□□□ -0.49
CLK3-201ENST00000345005 CLCA2Q9UQC9 943 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 PCDHGB2Q9Y5G2 931 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 RP1P56715 2156 aa11.99□□□□□ -0.49
CLK3-201ENST00000345005 ADAMTS9Q9P2N4 1935 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 IGHV1OR21-1A0A087WYE8 117 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 A0A1W2PS29 197 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 TNFRSF11BO00300 401 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 CYR61O00622 381 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 DUX1O43812 170 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 SLC28A2O43868 658 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 OPN1SWP03999 348 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 HMGN2P05204 90 aaKnown RBP11.98□□□□□ -0.49
CLK3-201ENST00000345005 NR2F1P10589 423 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 SEPHS1P49903 392 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms