RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TNFRSF17Q02223 184 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 ILF3Q12906 894 aaKnown RBP eCLIP9.67□□□□□ -0.86
LIMA1-201ENST00000341247 GNA13Q14344 377 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 SUZ12Q15022 739 aaKnown RBP9.67□□□□□ -0.86
LIMA1-201ENST00000341247 MFSD12Q6NUT3 480 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 HSDL2Q6YN16 418 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 OR52I1Q8NGK6 324 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 SFXN5Q8TD22 340 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 ZFPM2Q8WW38 1151 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 RNF31Q96EP0 1072 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 NEURL2Q9BR09 285 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 CYP8B1Q9UNU6 501 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 CSNK1G3Q9Y6M4 447 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 SHISA7A6NL88 538 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 SGK494L7N484 410 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 PEX12O00623 359 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 FGF17O60258 216 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 CLEC2LP0C7M8 214 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 LTBRP36941 435 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 HTR4Q13639 388 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 PUS10Q3MIT2 529 aaKnown RBP9.67□□□□□ -0.86
LIMA1-201ENST00000341247 SLC35F1Q5T1Q4 408 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 PLEKHG7Q6ZR37 379 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 Q6ZS52 159 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 TAF8Q7Z7C8 310 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 CADM3Q8N126 398 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 FAM160A2Q8N612 972 aaPredicted RBP9.67□□□□□ -0.86
LIMA1-201ENST00000341247 RERGQ96A58 199 aaPredicted RBP9.67□□□□□ -0.86
LIMA1-201ENST00000341247 RIPOR3Q96MK2 946 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 RACGAP1Q9H0H5 632 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 LMAN2LQ9H0V9 348 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 KLHL28Q9NXS3 571 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 SLC7A7Q9UM01 511 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 DAPP1Q9UN19 280 aa9.67□□□□□ -0.86
LIMA1-201ENST00000341247 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 PLD2O14939 933 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 THY1P04216 161 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 SOX6P35712 828 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 UGT2B10P36537 528 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 SMSP52788 366 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 ADAM15Q13444 863 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 MAPK14Q16539 360 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 CDC73Q6P1J9 531 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 SLC27A4Q6P1M0 643 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 C1orf94Q6P1W5 598 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 FRRS1Q6ZNA5 592 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 BBS1Q8NFJ9 593 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 OR4F15Q8NGB8 312 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 RNFT2Q96EX2 444 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 ART5Q96L15 291 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 TM9SF2Q99805 663 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 LYARQ9NX58 379 aaKnown RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 KCMF1Q9P0J7 381 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 TGM1P22735 817 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 PSMA1P25786 263 aaKnown RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 TLX1P31314 330 aaPredicted RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 ATP6V1E1P36543 226 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 TRAM2Q15035 370 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 C22orf42Q6IC83 251 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 FLVCR1-AS1Q8TAF5 88 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 GPR151Q8TDV0 419 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 HPS1Q92902 700 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 SCARF2Q96GP6 870 aaPredicted RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 ZNF764Q96H86 408 aaPredicted RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 CCDC3Q9BQI4 270 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 MND1Q9BWT6 205 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 C2orf42Q9NWW7 574 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 CPNE7Q9UBL6 633 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 SEC16AO15027 2179 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 ZC3H12DA2A288 527 aaKnown RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 CASC3O15234 703 aaKnown RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 KCNJ13O60928 360 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 UPK1BO75841 260 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 ACP2P11117 423 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 SPNP16150 400 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 GABRG2P18507 467 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 NDUFS1P28331 727 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 CAV3P56539 151 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 KIAA1024LP59773 190 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 ST3GAL3Q11203 375 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 C1DQ13901 141 aaKnown RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 NNATQ16517 81 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 FCRLBQ6BAA4 426 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 ZNF836Q6ZNA1 936 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 GDF7Q7Z4P5 450 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 LYSMD2Q8IV50 215 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 SLC22A18ASQ8N1D0 253 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 METTL27Q8N6F8 245 aaPredicted RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 SYT14Q8NB59 555 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 PIGXQ8TBF5 258 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 DIO2Q92813 273 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 SLC22A18Q96BI1 424 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 C1GALT1C1Q96EU7 318 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 SLC41A3Q96GZ6 507 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 MS4A4EQ96PG1 132 aa9.66□□□□□ -0.86
LIMA1-201ENST00000341247 TRNT1Q96Q11 434 aaKnown RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 SMAD5Q99717 465 aaKnown RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 CACYBPQ9HB71 228 aaKnown RBP9.66□□□□□ -0.86
LIMA1-201ENST00000341247 ZNF443Q9Y2A4 671 aaPredicted RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms