RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 UGT2B11O75310 529 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 AK1P00568 194 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 TFPTP0C1Z6 253 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 IL12BP29460 328 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 CASRP41180 1078 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 SLC7A2P52569 658 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 PNLIPRP2P54317 469 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 PSMD4P55036 377 aaKnown RBP20.4■□□□□ 0.86
SDC3-202ENST00000339394 BNIP1Q12981 228 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 ADRM1Q16186 407 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 SYPL1Q16563 259 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 RINLQ6ZS11 566 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 ZNF227Q86WZ6 799 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 DND1Q8IYX4 353 aaKnown RBP20.4■□□□□ 0.86
SDC3-202ENST00000339394 CYP4Z2PQ8N1L4 340 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 OR10G3Q8NGC4 313 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 TM9SF4Q92544 642 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 COL21A1Q96P44 957 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 SIGLEC12Q96PQ1 595 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 SDF2Q99470 211 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 G6PC3Q9BUM1 346 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 TUBD1Q9UJT1 453 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 LIPT1Q9Y234 373 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 L3MBTL1Q9Y468 752 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 ZNF451Q9Y4E5 1061 aa20.4■□□□□ 0.86
SDC3-202ENST00000339394 EPG5Q9HCE0 2579 aa20.39■□□□□ 0.86
SDC3-202ENST00000339394 ABCB7O75027 752 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 NEURL1O76050 574 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 OR1C1Q15619 314 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 CPEB4Q17RY0 729 aaKnown RBP eCLIP20.39■□□□□ 0.85
SDC3-202ENST00000339394 MDGA2Q7Z553 956 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 ZAR1Q86SH2 424 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 SERPINA11Q86U17 422 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 GPALPP1Q8IXQ4 340 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 PGAM4Q8N0Y7 254 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 SLC38A5Q8WUX1 472 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 SGCZQ96LD1 299 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 ADNPQ9H2P0 1102 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 SPAG4Q9NPE6 437 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 NDE1Q9NXR1 346 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 P2RX2Q9UBL9 471 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 TP53TG5Q9Y2B4 290 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 CSAG2Q9Y5P2 127 aa20.39■□□□□ 0.85
SDC3-202ENST00000339394 FCMRO60667 390 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 CD97P48960 835 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 GZMMP51124 257 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 MAPK11Q15759 364 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 CYP51A1Q16850 503 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 GPAT3Q53EU6 434 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 GCNT6Q5T4J0 391 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 C16orf89Q6UX73 402 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 OLIG3Q7RTU3 272 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 NUP54Q7Z3B4 507 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 ANKFN1Q8N957 763 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 EXD3Q8N9H8 876 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 FAM13CQ8NE31 585 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 CATSPER1Q8NEC5 780 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 ZNF583Q96ND8 569 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 TRNT1Q96Q11 434 aaKnown RBP20.38■□□□□ 0.85
SDC3-202ENST00000339394 PIF1Q9H611 641 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 TMEM38AQ9H6F2 299 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 A4GALTQ9NPC4 353 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 TAS2R1Q9NYW7 299 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 ABCD2Q9UBJ2 740 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 EBAG9O00559 213 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 NME4O00746 187 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 STX11O75558 287 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 H6PDO95479 791 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 NR2F1P10589 423 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 TNFSF10P50591 281 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 GABPB1Q06547 395 aaPredicted RBP20.38■□□□□ 0.85
SDC3-202ENST00000339394 CALHM3Q86XJ0 350 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 PTOV1Q86YD1 416 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 DEFB107AQ8IZN7 70 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 ZADH2Q8N4Q0 377 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 C9orf43Q8TAL5 461 aaPredicted RBP20.38■□□□□ 0.85
SDC3-202ENST00000339394 HGDQ93099 445 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 ZNF350Q9GZX5 532 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.38■□□□□ 0.851e-6■■■□□ 18.7
SDC3-202ENST00000339394 C1orf21Q9H246 121 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 SH2D2AQ9NP31 389 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 ZNF71Q9NQZ8 489 aaPredicted RBP20.38■□□□□ 0.85
SDC3-202ENST00000339394 TMEM181Q9P2C4 612 aa20.38■□□□□ 0.85
SDC3-202ENST00000339394 CHCHD2Q9Y6H1 151 aaPredicted RBP20.38■□□□□ 0.85
SDC3-202ENST00000339394 SPENQ96T58 3664 aaKnown RBP20.37■□□□□ 0.85
SDC3-202ENST00000339394 ERVH48-1M5A8F1 160 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 TP53I11O14683 189 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 SLC28A2O43868 658 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 ZIC2O95409 532 aaPredicted RBP20.37■□□□□ 0.85
SDC3-202ENST00000339394 BCHEP06276 602 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 CHRM4P08173 479 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 CYP4B1P13584 511 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 ATP6V1C1P21283 382 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 EFR3AQ14156 821 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 RTL4Q6ZR62 310 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 ASB18Q6ZVZ8 466 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 NET1Q7Z628 596 aaPredicted RBP20.37■□□□□ 0.85
SDC3-202ENST00000339394 GOLM1Q8NBJ4 401 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 TMEM19Q96HH6 336 aa20.37■□□□□ 0.85
SDC3-202ENST00000339394 MKLN1Q9UL63 735 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms