RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TMCO6Q96DC7 493 aa14.45□□□□□ -0.1
CLN3-201ENST00000333496 FAM120BQ96EK7 910 aaKnown RBP14.45□□□□□ -0.1
CLN3-201ENST00000333496 DMRTA2Q96SC8 542 aa14.45□□□□□ -0.1
CLN3-201ENST00000333496 SLC6A15Q9H2J7 730 aa14.45□□□□□ -0.1
CLN3-201ENST00000333496 LDAHQ9H6V9 325 aa14.45□□□□□ -0.1
CLN3-201ENST00000333496 KLRF1Q9NZS2 232 aa14.45□□□□□ -0.1
CLN3-201ENST00000333496 SUCOQ9UBS9 1254 aaKnown RBP14.45□□□□□ -0.1
CLN3-201ENST00000333496 C15orf41Q9Y2V0 281 aa14.45□□□□□ -0.1
CLN3-201ENST00000333496 GXYLT2A0PJZ3 443 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 OR14I1A6ND48 311 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 B4DXG7 233 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 E9PLN8 166 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 H0YHG0 523 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 KLF11O14901 512 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 SNPHO15079 494 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 HDAC3O15379 428 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 HCN1O60741 890 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 C6orf47O95873 294 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 ALDOCP09972 364 aaKnown RBP14.44□□□□□ -0.1
CLN3-201ENST00000333496 ACP2P11117 423 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 ESRRAP11474 423 aaPredicted RBP14.44□□□□□ -0.1
CLN3-201ENST00000333496 CYP4B1P13584 511 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 DDX5P17844 614 aaKnown RBP14.44□□□□□ -0.1
CLN3-201ENST00000333496 KRT20P35900 424 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 MAN2A2P49641 1150 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 GAS1P54826 345 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 EFR3AQ14156 821 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 GXYLT1Q4G148 440 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 EXOSC6Q5RKV6 272 aaKnown RBP14.44□□□□□ -0.1
CLN3-201ENST00000333496 OGFOD2Q6N063 350 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 ANGPTL8Q6UXH0 198 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 MAMDC2Q7Z304 686 aaPredicted RBP14.44□□□□□ -0.1
CLN3-201ENST00000333496 TRIM42Q8IWZ5 723 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 NATD1Q8N6N6 113 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 WDSUB1Q8N9V3 476 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 CCDC197Q8NCU1 140 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 OR1J4Q8NGS1 313 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 CEP70Q8NHQ1 597 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 OR5P2Q8WZ92 322 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 PIK3R3Q92569 461 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 MS4A4EQ96PG1 132 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 ZNF317Q96PQ6 595 aaPredicted RBP14.44□□□□□ -0.1
CLN3-201ENST00000333496 VKORC1Q9BQB6 163 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 DUSP26Q9BV47 211 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 BHLHE41Q9C0J9 482 aaPredicted RBP14.44□□□□□ -0.1
CLN3-201ENST00000333496 WDR55Q9H6Y2 383 aaPredicted RBP14.44□□□□□ -0.1
CLN3-201ENST00000333496 CXorf36Q9H7Y0 433 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 C3orf14Q9HBI5 128 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 Q9N2J8 555 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 PNPLA3Q9NST1 481 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 ATAD3AQ9NVI7 634 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 FLRT3Q9NZU0 649 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 B4GALT7Q9UBV7 327 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 CAPN7Q9Y6W3 813 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 NKX2-2O95096 273 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 IGKV1D-16P01601 117 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 HPNP05981 417 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 ELAVL4P26378 380 aaKnown RBP14.44□□□□□ -0.1
CLN3-201ENST00000333496 COL8A1P27658 744 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 GABRA3P34903 492 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 TRPC1P48995 793 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 WNT3P56703 355 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 ZNHIT3Q15649 155 aaPredicted RBP14.44□□□□□ -0.1
CLN3-201ENST00000333496 MFSD12Q6NUT3 480 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 MTFR2Q6P444 385 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 SZRD1Q7Z422 152 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 MRGPRGQ86SM5 289 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 RPRMLQ8N4K4 120 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 MARVELD2Q8N4S9 558 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 CDRT4Q8N9R6 151 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 SLC16A11Q8NCK7 471 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 OR5M9Q8NGP3 310 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 NEIL3Q8TAT5 605 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 C16orf58Q96GQ5 468 aa14.44□□□□□ -0.1
CLN3-201ENST00000333496 PRPF18Q99633 342 aaKnown RBP14.44□□□□□ -0.1
CLN3-201ENST00000333496 KIAA1549Q9HCM3 1950 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 TTC36A6NLP5 189 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 C17orf51A8MQB3 221 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 ZNF195O14628 629 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 FADS1O60427 444 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 SCN2BO60939 215 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 TRAPPC6AO75865 159 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 IL33O95760 270 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 EPHA3P29320 983 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 HBA1P69905 142 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 PHC1P78364 1004 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 CDSNQ15517 529 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 DUSP5Q16690 384 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 DECR1Q16698 335 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 PGS1Q32NB8 556 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 OR4F3Q6IEY1 312 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 MAVSQ7Z434 540 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 FBXO30Q8TB52 745 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 PHF10Q8WUB8 498 aaKnown RBP14.43□□□□□ -0.1
CLN3-201ENST00000333496 SLC9A6Q92581 669 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 YIPF4Q9BSR8 244 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 RTN4RQ9BZR6 473 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 DPY30Q9C005 99 aa14.43□□□□□ -0.1
CLN3-201ENST00000333496 TP63Q9H3D4 680 aaPredicted RBP14.43□□□□□ -0.1
CLN3-201ENST00000333496 EXO5Q9H790 373 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms