RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 TBC1D3CQ6IPX1 549 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 NOXA1Q86UR1 476 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 KIF18BQ86Y91 864 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TBC1D3Q8IZP1 549 aaPredicted RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 FAM26EQ8N5C1 309 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 GNPDA2Q8TDQ7 276 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 TMEM255BQ8WV15 326 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 LCN9Q8WX39 176 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 SLC7A6Q92536 515 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 WDR34Q96EX3 536 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 ZNF717Q9BY31 904 aaPredicted RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 C6orf106Q9H6K1 298 aaPredicted RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 PRKAG2Q9UGJ0 569 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 LSM2Q9Y333 95 aaKnown RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 DAPL1A0PJW8 107 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 PAPLNO95428 1278 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 LALBAP00709 142 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 KIR2DL3P43628 341 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 DUSP2Q05923 314 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 PRDX1Q06830 199 aaKnown RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 ENTPD8Q5MY95 495 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 CDC73Q6P1J9 531 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 MZT2AQ6P582 158 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 VASH1Q7L8A9 365 aaPredicted RBP12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 YIPF7Q8N8F6 280 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 SAMD12Q8N8I0 201 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 SLC16A11Q8NCK7 471 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 OTUB2Q96DC9 234 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 ST6GAL2Q96JF0 529 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 IFT27Q9BW83 186 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 PELI2Q9HAT8 420 aa12.1□□□□□ -0.47
HMGCS1-201ENST00000325110 HEATR5BQ9P2D3 2071 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 ANKRD34BA5PLL1 514 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 LRIT2A6NDA9 550 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 GYPBP06028 91 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 REEP5Q00765 189 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 OCLNQ16625 522 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 OR51L1Q8NGJ5 315 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 RSPRY1Q96DX4 576 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 DCLRE1CQ96SD1 692 aaKnown RBP12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 IRF2BPLQ9H1B7 796 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 LHX9Q9NQ69 397 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 MCUBQ9NWR8 336 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 SPHK1Q9NYA1 384 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 SLC7A7Q9UM01 511 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 EXOSC1Q9Y3B2 195 aaKnown RBP12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 PLXND1Q9Y4D7 1925 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 HMX3A6NHT5 357 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 J3QLW9 94 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 GABRPO00591 440 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 DVL2O14641 736 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 HOXC11O43248 304 aaPredicted RBP12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 LGI1O95970 557 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 MSL3P1P0C860 447 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 PRG2P13727 222 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 ZNF19P17023 458 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 PCBP4P57723 403 aaKnown RBP12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 RAB40BQ12829 278 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 DSG2Q14126 1118 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 ZSWIM7Q19AV6 140 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 BTBD16Q32M84 506 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 FAM27D1Q5T7N8 215 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 ZNF438Q7Z4V0 828 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 UBE3DQ7Z6J8 389 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 RASGRP3Q8IV61 690 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 FBXL6Q8N531 539 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 GDPD1Q8N9F7 314 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 OR52E1Q8NGJ3 308 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 CDS1Q92903 461 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 ACSS1Q9NUB1 689 aaPredicted RBP12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 ING3Q9NXR8 418 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 CHD7Q9P2D1 2997 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 PLEKHB1Q9UF11 243 aaPredicted RBP12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 ADAM30Q9UKF2 790 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 INSL6Q9Y581 213 aa12.09□□□□□ -0.47
HMGCS1-201ENST00000325110 LYRM1O43325 122 aa12.08□□□□□ -0.47
HMGCS1-201ENST00000325110 FGF19O95750 216 aa12.08□□□□□ -0.47
HMGCS1-201ENST00000325110 LAMP2P13473 410 aa12.08□□□□□ -0.47
HMGCS1-201ENST00000325110 FIGNL1Q6PIW4 674 aa12.08□□□□□ -0.47
HMGCS1-201ENST00000325110 PEX5LQ8IYB4 626 aa12.08□□□□□ -0.47
HMGCS1-201ENST00000325110 NATD1Q8N6N6 113 aa12.08□□□□□ -0.47
HMGCS1-201ENST00000325110 SLC37A3Q8NCC5 494 aa12.08□□□□□ -0.47
HMGCS1-201ENST00000325110 OR56A1Q8NGH5 318 aa12.08□□□□□ -0.47
HMGCS1-201ENST00000325110 RELTQ969Z4 430 aa12.08□□□□□ -0.47
HMGCS1-201ENST00000325110 NFKBIL1Q9UBC1 381 aaPredicted RBP12.08□□□□□ -0.47
HMGCS1-201ENST00000325110 IQCMA0A1B0GVH7 501 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 NOTOA8MTQ0 251 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 BTN3A3O00478 584 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 DRD2P14416 443 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 NT5EP21589 574 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 PDX1P52945 283 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 PPP3R1P63098 170 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 C1QTNF12Q5T7M4 302 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 ZC3H14Q6PJT7 736 aaKnown RBP12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 CXXC5Q7LFL8 322 aaKnown RBP12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 BTBD1Q9H0C5 482 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 ALG5Q9Y673 324 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 DSPPQ9NZW4 1301 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 TSPAN11A1L157 253 aa12.08□□□□□ -0.48
HMGCS1-201ENST00000325110 ARRDC5A6NEK1 342 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms