RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 GIMAP5Q96F15 307 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 SLC6A16Q9GZN6 736 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 QRSL1Q9H0R6 528 aaKnown RBP12.67□□□□□ -0.38
SKA3-201ENST00000298260 TMEM38AQ9H6F2 299 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 REEP4Q9H6H4 257 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 COPZ2Q9P299 210 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 LIPT1Q9Y234 373 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 KIAA1671Q9BY89 1806 aa12.67□□□□□ -0.38
SKA3-201ENST00000298260 MYADML2A6NDP7 307 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 A8MXK9 166 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 E9PI62 339 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 MID1O15344 667 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 PRODHO43272 600 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 HYAL3O43820 417 aaPredicted RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 IFNA14P01570 189 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 SRPRAP08240 638 aaKnown RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 ACSL1P33121 698 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 PREPP48147 710 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 CDH11P55287 796 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 UBE2MP61081 183 aaKnown RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 DUSP4Q13115 394 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 SYPL1Q16563 259 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 SLC6A19Q695T7 634 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 RPTNQ6XPR3 784 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 FBXO15Q8NCQ5 510 aaPredicted RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 ZNF740Q8NDX6 193 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 OR5D16Q8NGK9 328 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 OR51Q1Q8NH59 317 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 RPLP0P6Q8NHW5 317 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 SUSD3Q96L08 255 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 FCRL4Q96PJ5 515 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 NTMQ9P121 344 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 ERVK-19Q9WJR5 959 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 FAAHO00519 579 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 SOCS6O14544 535 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 IGF2P01344 180 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 ADRB1P08588 477 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 RAD52P43351 418 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 RAB40BQ12829 278 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 HSPB3Q12988 150 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 ARL9Q6T311 187 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 C17orf99Q6UX52 265 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 LRRC28Q86X40 367 aaPredicted RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 ZNF454Q8N9F8 522 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 OR51G2Q8NGK0 314 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 ADAMTS19Q8TE59 1207 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 ESRP2Q9H6T0 727 aaKnown RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 DDX31Q9H8H2 851 aaKnown RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 EVA1AQ9H8M9 152 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 MED20Q9H944 212 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 MGAT4CQ9UBM8 478 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 KIF25Q9UIL4 384 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 A4GNTQ9UNA3 340 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 PRELID3BQ9Y3B1 194 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 MANSC4A6NHS7 340 aaPredicted RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 CASC3O15234 703 aaKnown RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 UCHL1P09936 223 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 FURINP09958 794 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 MMP12P39900 470 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 ASMTP46597 345 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 CDH4P55283 916 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 ERVK-25P63136 954 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 SNTB2Q13425 540 aaKnown RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 HSD17B12Q53GQ0 312 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 FAM74A1Q5RGS3 127 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 RNLSQ5VYX0 342 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 SLC25A25Q6KCM7 469 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 OVCH2Q7RTZ1 564 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 C2orf73Q8N5S3 287 aaPredicted RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 UXS1Q8NBZ7 420 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 BVESQ8NE79 360 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 TRPV1Q8NER1 839 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 ADAMTS14Q8WXS8 1223 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 NEIL2Q969S2 332 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 ADAT1Q9BUB4 502 aaKnown RBP12.66□□□□□ -0.38
SKA3-201ENST00000298260 C20orf85Q9H1P6 137 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 GULP1Q9UBP9 304 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 IRAK3Q9Y616 596 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 STON1Q9Y6Q2 735 aa12.66□□□□□ -0.38
SKA3-201ENST00000298260 DOCK6Q96HP0 2047 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 ARPC4-TTLL3A0A0A6YYG9 625 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 ARHGEF33A8MVX0 844 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 RTCAO00442 366 aaKnown RBP12.65□□□□□ -0.38
SKA3-201ENST00000298260 B4GALT2O60909 372 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 KLHL18O94889 574 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 SLC16A8O95907 504 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 IL3P08700 152 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 RAB3AP20336 220 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 OR1G1P47890 313 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 SLC3A1Q07837 685 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 MAP2K5Q13163 448 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 TUSC3Q13454 348 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 SFXN4Q6P4A7 337 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 SIRT6Q8N6T7 355 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 CLRN3Q8NCR9 226 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 OR52B4Q8NGK2 314 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 ORAI1Q96D31 301 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 YIPF4Q9BSR8 244 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 MAN2C1Q9NTJ4 1040 aa12.65□□□□□ -0.38
SKA3-201ENST00000298260 RPS6KB2Q9UBS0 482 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms