RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 CEBPBP17676 345 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CELP19835 753 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 HSF1Q00613 529 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ENPP2Q13822 863 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CPSF6Q16630 551 aaKnown RBP eCLIP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 LIPKQ5VXJ0 399 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 BTNL8Q6UX41 500 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 NUDT13Q86X67 352 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SNX29P2Q8IUI4 249 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 GRAPLQ8TC17 118 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ST8SIA4Q92187 359 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 FAM122AQ96E09 287 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 GORASP2Q9H8Y8 452 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 EQTNQ9NQ60 294 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ABI3Q9P2A4 366 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 DHDHQ9UQ10 334 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PRKAB2O43741 272 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 POP7O75817 140 aaKnown RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CSF2P04141 144 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PMCHP20382 165 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ADH7P40394 386 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 RPIAP49247 311 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 VEZF1Q14119 521 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 WDR73Q6P4I2 378 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 C12orf54Q6X4T0 127 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 KCTD9Q7L273 389 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ZBTB46Q86UZ6 589 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SULF2Q8IWU5 870 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 GCNT2Q8N0V5 402 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 NKAIN3Q8N8D7 197 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 KIAA1191Q96A73 305 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 NICN1Q9BSH3 213 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 ST6GALNAC4Q9H4F1 302 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 NTN4Q9HB63 628 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 GJD2Q9UKL4 321 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 KDM3BQ7LBC6 1761 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 NID2Q14112 1375 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 HSPB2A8KAH6 182 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SLC17A3O00476 420 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CT45A8P0DMV1 189 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CT45A9P0DMV2 189 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 NDST2P52849 883 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 HSPB2Q16082 182 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 MOGAT2Q3SYC2 334 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CT45A2Q5DJT8 189 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 MBOAT1Q6ZNC8 495 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CATSPERGQ6ZRH7 1159 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 DCXRQ7Z4W1 244 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 FBXO22Q8NEZ5 403 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 BTN2A3PQ96KV6 586 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CHST7Q9NS84 486 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SLCO1B1Q9Y6L6 691 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 UBR3Q6ZT12 1888 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 RGS13O14921 159 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PIM1P11309 404 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 HOXB1P14653 301 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 POU3F3P20264 500 aaPredicted RBP4.62□□□□□ -1.67
CSMD3-201ENST00000297405 GALP22466 123 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 PSMD8P48556 350 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 TPPP2P59282 170 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 KCNAB2Q13303 367 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 CES4AQ5XG92 561 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 FRG2Q64ET8 278 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 STPG2Q8N412 459 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SLC16A10Q8TF71 515 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 FRG2BQ96QU4 278 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 GPR22Q99680 433 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 POLE4Q9NR33 117 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 GPR173Q9NS66 373 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 SPO11Q9Y5K1 396 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 NDUFB9Q9Y6M9 179 aa4.62□□□□□ -1.67
CSMD3-201ENST00000297405 TK1P04183 234 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 SHMT1P34896 483 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 ARL2P36404 184 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 SEMA3BQ13214 749 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 MAP4K3Q8IVH8 894 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 NAXDQ8IW45 347 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 CLIP4Q8N3C7 705 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 ECHDC3Q96DC8 303 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 IMP4Q96G21 291 aaKnown RBP4.61□□□□□ -1.67
CSMD3-201ENST00000297405 SCLYQ96I15 445 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 ARHGDIGQ99819 225 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 PTHLHP12272 177 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 AKR1A1P14550 325 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 CD44P16070 742 aaKnown RBP4.61□□□□□ -1.67
CSMD3-201ENST00000297405 CYP2B6P20813 491 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 CX3CR1P49238 355 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 RAB11AP62491 216 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 CFAP77Q6ZQR2 320 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 FAM131BQ86XD5 332 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 OR4K17Q8NGC6 315 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 IL31RAQ8NI17 732 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 NKD1Q969G9 470 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 ZNF599Q96NL3 588 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 GATA5Q9BWX5 397 aaPredicted RBP4.61□□□□□ -1.67
CSMD3-201ENST00000297405 ADAM33Q9BZ11 813 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 RIOX1Q9H6W3 641 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 FBRSL1Q9HCM7 1045 aaKnown RBP4.61□□□□□ -1.67
CSMD3-201ENST00000297405 CDC14AQ9UNH5 594 aa4.61□□□□□ -1.67
CSMD3-201ENST00000297405 TRBV2A0A0J9YWF9 115 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms