RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 GSX1Q9H4S2 264 aaPredicted RBP11.55□□□□□ -0.56
CD44-203ENST00000278386 PLEKHF2Q9H8W4 249 aa11.55□□□□□ -0.56
CD44-203ENST00000278386 NEUROD4Q9HD90 331 aa11.55□□□□□ -0.56
CD44-203ENST00000278386 DDX18Q9NVP1 670 aaKnown RBP11.55□□□□□ -0.56
CD44-203ENST00000278386 PSMC3IPQ9P2W1 217 aaPredicted RBP11.55□□□□□ -0.56
CD44-203ENST00000278386 NDRG3Q9UGV2 375 aa11.55□□□□□ -0.56
CD44-203ENST00000278386 TBK1Q9UHD2 729 aa11.55□□□□□ -0.56
CD44-203ENST00000278386 MAP1AP78559 2803 aaPredicted RBP11.55□□□□□ -0.56
CD44-203ENST00000278386 HEATR5AQ86XA9 2040 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 UQCRHLA0A096LP55 91 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 B4DXG7 233 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 H3BML4 177 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 TNFSF13O75888 250 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 MYL2P10916 166 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 PYGBP11216 843 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 PEPDP12955 493 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 GAS1P54826 345 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 FOXA1P55317 472 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 EEF1A1P68104 462 aaKnown RBP11.54□□□□□ -0.56
CD44-203ENST00000278386 PSG6Q00889 435 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 GANABQ14697 944 aaKnown RBP11.54□□□□□ -0.56
CD44-203ENST00000278386 ZNHIT3Q15649 155 aaPredicted RBP11.54□□□□□ -0.56
CD44-203ENST00000278386 DECR1Q16698 335 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 EEF1A1P5Q5VTE0 462 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 OR2A2Q6IF42 318 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 PPP4R4Q6NUP7 873 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 GALNT18Q6P9A2 607 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 VWA1Q6PCB0 445 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 TRMT10CQ7L0Y3 403 aaKnown RBP11.54□□□□□ -0.56
CD44-203ENST00000278386 WFDC11Q8NEX6 87 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 GSTO2Q9H4Y5 243 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 Q9N2J8 555 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 SDHAF3Q9NRP4 125 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 ABCG2Q9UNQ0 655 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 MRPS18CQ9Y3D5 142 aaKnown RBP11.54□□□□□ -0.56
CD44-203ENST00000278386 TESMINQ9Y4I5 508 aa11.54□□□□□ -0.56
CD44-203ENST00000278386 A0A087WV62 115 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 A8MXE2 369 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 MYO1GB0I1T2 1018 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 MSTNO14793 375 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 GMFGO60234 142 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 ZIC3O60481 467 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 SLITRK5O94991 958 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 GSTA1P08263 222 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 CLK3P49761 638 aaKnown RBP11.53□□□□□ -0.56
CD44-203ENST00000278386 B3GALT5-AS1P59052 145 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 CFAP157Q5JU67 520 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 FADS6Q8N9I5 356 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 CCDC63Q8NA47 563 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 OR2M3Q8NG83 312 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 OR5M1Q8NGP8 315 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 ACMSDQ8TDX5 336 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 RNF138Q8WVD3 245 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 FIG4Q92562 907 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 CCDC126Q96EE4 140 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 MED18Q9BUE0 208 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 PINK1Q9BXM7 581 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 OPN3Q9H1Y3 402 aaPredicted RBP11.53□□□□□ -0.56
CD44-203ENST00000278386 GLIPR2Q9H4G4 154 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 PTGES2Q9H7Z7 377 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 MYNNQ9NPC7 610 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 EQTNQ9NQ60 294 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 DLL4Q9NR61 685 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 BEX4Q9NWD9 120 aaPredicted RBP11.53□□□□□ -0.56
CD44-203ENST00000278386 KLHL28Q9NXS3 571 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 FLRT3Q9NZU0 649 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 MED11Q9P086 117 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 C6orf203Q9P0P8 240 aaPredicted RBP11.53□□□□□ -0.56
CD44-203ENST00000278386 MRTO4Q9UKD2 239 aaKnown RBP11.53□□□□□ -0.56
CD44-203ENST00000278386 GRID1Q9ULK0 1009 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 NAV3Q8IVL0 2385 aa11.53□□□□□ -0.56
CD44-203ENST00000278386 A0A1W2PPR1 153 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 GLRA3O75311 464 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 CRHP06850 196 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 POU2F1P14859 743 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 FOSL1P15407 271 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 CD53P19397 219 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 ADSLP30566 484 aaPredicted RBP11.52□□□□□ -0.57
CD44-203ENST00000278386 KCNJ5P48544 419 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 PSMD4P55036 377 aaKnown RBP11.52□□□□□ -0.57
CD44-203ENST00000278386 EEFSECP57772 596 aaKnown RBP11.52□□□□□ -0.57
CD44-203ENST00000278386 FAM27E3Q08E93 113 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 HSPB3Q12988 150 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 BCL2A1Q16548 175 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 PRSS53Q2L4Q9 553 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 CYP27C1Q4G0S4 372 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 FAM71E1Q6IPT2 247 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 ZYG11AQ6WRX3 759 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 SZRD1Q7Z422 152 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 IFT20Q8IY31 132 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 C11orf24Q96F05 449 aaPredicted RBP11.52□□□□□ -0.57
CD44-203ENST00000278386 PGM2Q96G03 612 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 ZNF845Q96IR2 970 aaPredicted RBP11.52□□□□□ -0.57
CD44-203ENST00000278386 PIGQQ9BRB3 760 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 TBL1XR1Q9BZK7 514 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 RRAGDQ9NQL2 400 aaPredicted RBP11.52□□□□□ -0.57
CD44-203ENST00000278386 FAM120CQ9NX05 1096 aaKnown RBP11.52□□□□□ -0.57
CD44-203ENST00000278386 SIRT5Q9NXA8 310 aa11.52□□□□□ -0.57
CD44-203ENST00000278386 ZNF226Q9NYT6 803 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms