RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 PRRG3Q9BZD7 231 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 UPF3BQ9BZI7 483 aaKnown RBP4.2□□□□□ -1.74
CD44-202ENST00000278385 TRIM9Q9C026 710 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 DCLK3Q9C098 648 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 POLR3FQ9H1D9 316 aaPredicted RBP4.2□□□□□ -1.74
CD44-202ENST00000278385 KLK15Q9H2R5 256 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 DPAGT1Q9H3H5 408 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 RANBP3Q9H6Z4 567 aaPredicted RBP4.2□□□□□ -1.74
CD44-202ENST00000278385 ACTR5Q9H9F9 607 aaPredicted RBP4.2□□□□□ -1.74
CD44-202ENST00000278385 SEMA4GQ9NTN9 838 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 SERTAD4Q9NUC0 356 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 C20orf96Q9NUD7 363 aaPredicted RBP4.2□□□□□ -1.74
CD44-202ENST00000278385 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.2□□□□□ -1.74
CD44-202ENST00000278385 GAR1Q9NY12 217 aaKnown RBP4.2□□□□□ -1.74
CD44-202ENST00000278385 TUBA8Q9NY65 449 aaPredicted RBP4.2□□□□□ -1.74
CD44-202ENST00000278385 ADAM22Q9P0K1 906 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 PIPOXQ9P0Z9 390 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 TXNDC16Q9P2K2 825 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 P2RX2Q9UBL9 471 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 ADAM21Q9UKJ8 722 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 ADAM28Q9UKQ2 775 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 FBXO4Q9UKT5 387 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 VANGL2Q9ULK5 521 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 CFL2Q9Y281 166 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 KLK4Q9Y5K2 254 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 PUS1Q9Y606 427 aaKnown RBP eCLIP4.2□□□□□ -1.74
CD44-202ENST00000278385 MTCH2Q9Y6C9 303 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 LAMA4Q16363 1823 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 FRMPD3Q5JV73 1810 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 ATXN2Q99700 1313 aaKnown RBP4.2□□□□□ -1.74
CD44-202ENST00000278385 STK36Q9NRP7 1315 aa4.2□□□□□ -1.74
CD44-202ENST00000278385 LRRC37A2A6NM11 1700 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 LOC105371242A0A075B767 164 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 RNF222A6NCQ9 220 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 TMEM202A6NGA9 273 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 WASHC1A8K0Z3 465 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 GOLGA8MH3BSY2 632 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 M0QZ24 198 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 NBR2O15453 112 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 ZSCAN12O43309 604 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 TIMM8AO60220 97 aaPredicted RBP4.19□□□□□ -1.74
CD44-202ENST00000278385 PDE5AO76074 875 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 JTBO76095 146 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 OR2F2O95006 317 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 TSPAN12O95859 305 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 CCNE2O96020 404 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 ERCC1P07992 297 aaPredicted RBP4.19□□□□□ -1.74
CD44-202ENST00000278385 SP9P0CG40 484 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 FGF5P12034 268 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 EZRP15311 586 aaKnown RBP4.19□□□□□ -1.74
CD44-202ENST00000278385 NQO2P16083 231 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 WT1P19544 449 aaPredicted RBP4.19□□□□□ -1.74
CD44-202ENST00000278385 GSTM3P21266 225 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 FCARP24071 287 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 OXTRP30559 389 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 HOXA9P31269 272 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 CCT3P49368 545 aaKnown RBP4.19□□□□□ -1.74
CD44-202ENST00000278385 GDI2P50395 445 aaKnown RBP4.19□□□□□ -1.74
CD44-202ENST00000278385 TNFSF10P50591 281 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 TPMTP51580 245 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 CYP2J2P51589 502 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 THOP1P52888 689 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 IST1P53990 364 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 HERV-K104P63124 156 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 CALCOCO2Q13137 446 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 KEAP1Q14145 624 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 PIGHQ14442 188 aaPredicted RBP4.19□□□□□ -1.74
CD44-202ENST00000278385 CASP8Q14790 479 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 NONOQ15233 471 aaKnown RBP eCLIP4.19□□□□□ -1.74
CD44-202ENST00000278385 EXT1Q16394 746 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 CAMK4Q16566 473 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 C6orf226Q5I0X4 101 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 NDUFAF5Q5TEU4 345 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 SIGIRRQ6IA17 410 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 CES5AQ6NT32 575 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 PCSK4Q6UW60 755 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 TMEM107Q6UX40 140 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 WASH2PQ6VEQ5 465 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 CENPUQ71F23 418 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 RBM45Q8IUH3 476 aaKnown RBP4.19□□□□□ -1.74
CD44-202ENST00000278385 SELENOHQ8IZQ5 122 aaKnown RBP4.19□□□□□ -1.74
CD44-202ENST00000278385 OR4A15Q8NGL6 344 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 RHEBL1Q8TAI7 183 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 SCARB1Q8WTV0 552 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 UBTD2Q8WUN7 234 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 ST8SIA1Q92185 356 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 SLC38A4Q969I6 547 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 R3HDM4Q96D70 268 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 MARK4Q96L34 752 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 FAM20AQ96MK3 541 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 MBOAT7Q96N66 472 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 TECTBQ96PL2 329 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 ZNF347Q96SE7 839 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 KRT12Q99456 494 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 WRAP53Q9BUR4 548 aaKnown RBP4.19□□□□□ -1.74
CD44-202ENST00000278385 RBM24Q9BX46 236 aaKnown RBP4.19□□□□□ -1.74
CD44-202ENST00000278385 TEKT3Q9BXF9 490 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 ANGPTL4Q9BY76 406 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 POTEKPQ9BYX7 375 aa4.19□□□□□ -1.74
CD44-202ENST00000278385 FAM49AQ9H0Q0 323 aaPredicted RBP4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms