RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 MRPL28Q13084 256 aaKnown RBP13.15□□□□□ -0.3
USH1C-201ENST00000005226 PLCZ1Q86YW0 608 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 NRMQ8IXM6 262 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 LINC01555Q8NAE3 123 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 OR8H1Q8NGG4 311 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 SMG7Q92540 1137 aaKnown RBP13.15□□□□□ -0.3
USH1C-201ENST00000005226 KCNJ15Q99712 375 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 C6orf106Q9H6K1 298 aaPredicted RBP13.15□□□□□ -0.3
USH1C-201ENST00000005226 ATG4BQ9Y4P1 393 aa13.15□□□□□ -0.3
USH1C-201ENST00000005226 A0A1W2PPV9 198 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 FGBP02675 491 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 THY1P04216 161 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 HLA-DPB1P04440 258 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 EIF4EP06730 217 aaKnown RBP13.14□□□□□ -0.31
USH1C-201ENST00000005226 OMPP47874 163 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 MAB21L1Q13394 359 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 SF3A2Q15428 464 aaKnown RBP13.14□□□□□ -0.31
USH1C-201ENST00000005226 ZNF697Q5TEC3 545 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 MTFR2Q6P444 385 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 DGLUCYQ7Z3D6 616 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 NRSN1Q8IZ57 195 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 KLHL36Q8N4N3 616 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 SUN5Q8TC36 379 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 TMEM255BQ8WV15 326 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 KAT2AQ92830 837 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 CNRIP1Q96F85 164 aaPredicted RBP13.14□□□□□ -0.31
USH1C-201ENST00000005226 ZC3HAV1LQ96H79 300 aaKnown RBP13.14□□□□□ -0.31
USH1C-201ENST00000005226 LRRC3BQ96PB8 259 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 ZCCHC2Q9C0B9 1178 aaKnown RBP13.14□□□□□ -0.31
USH1C-201ENST00000005226 NIPAL2Q9H841 368 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 HINT3Q9NQE9 182 aaKnown RBP13.14□□□□□ -0.31
USH1C-201ENST00000005226 DKK3Q9UBP4 350 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 COL4A6Q14031 1691 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 CHD7Q9P2D1 2997 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.14□□□□□ -0.31
USH1C-201ENST00000005226 A0A1W2PR48 441 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 SURF4O15260 269 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 EEF1E1O43324 174 aaKnown RBP13.14□□□□□ -0.31
USH1C-201ENST00000005226 HYAL3O43820 417 aaPredicted RBP13.14□□□□□ -0.31
USH1C-201ENST00000005226 SLC43A1O75387 559 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 GSTM3P21266 225 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 TAS2R38P59533 333 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 TSPAN31Q12999 210 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 FAM46CQ5VWP2 391 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 SIGIRRQ6IA17 410 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 LILRA6Q6PI73 481 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 SMARCD3Q6STE5 483 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 KRT74Q7RTS7 529 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 AMZ2Q86W34 360 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 LIX1LQ8IVB5 337 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 SLC38A6Q8IZM9 456 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 AKAP1Q92667 903 aaKnown RBP eCLIP13.14□□□□□ -0.31
USH1C-201ENST00000005226 SAMD8Q96LT4 415 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 ENKD1Q9H0I2 346 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 SCN3AQ9NY46 2000 aa13.14□□□□□ -0.31
USH1C-201ENST00000005226 SNTNA6NMZ2 147 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 E9PI62 339 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 CDC42EP2O14613 210 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 SCO1O75880 301 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 KHKP50053 298 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 LTB4RQ15722 352 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 DUSP6Q16828 381 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 C9orf64Q5T6V5 341 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 PLBD1Q6P4A8 553 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 LRRTM4Q86VH4 590 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 DCUN1D3Q8IWE4 304 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 GPR135Q8IZ08 494 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 POGLUT1Q8NBL1 392 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 BBS10Q8TAM1 723 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 SUN3Q8TAQ9 357 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 MAP6Q96JE9 813 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 THAP7Q9BT49 309 aaPredicted RBP13.13□□□□□ -0.31
USH1C-201ENST00000005226 DPEP2Q9H4A9 486 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 ACSS1Q9NUB1 689 aaPredicted RBP13.13□□□□□ -0.31
USH1C-201ENST00000005226 IMP3Q9NV31 184 aaKnown RBP13.13□□□□□ -0.31
USH1C-201ENST00000005226 CBLCQ9ULV8 474 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 KIF26AQ9ULI4 1882 aaPredicted RBP13.13□□□□□ -0.31
USH1C-201ENST00000005226 IGKV1-8A0A0C4DH67 115 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 PRRT4C9JH25 899 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 REM1O75628 298 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 FGF18O76093 207 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 ZIC2O95409 532 aaPredicted RBP13.13□□□□□ -0.31
USH1C-201ENST00000005226 CLCNKAP51800 687 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 CSNK1G2P78368 415 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 TIGD3Q6B0B8 471 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 FCRLBQ6BAA4 426 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 KIAA1211LQ6NV74 962 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 ANKRD54Q6NXT1 300 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 MZT2AQ6P582 158 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 ZNF322Q6U7Q0 402 aaPredicted RBP13.13□□□□□ -0.31
USH1C-201ENST00000005226 FAM109AQ8N4B1 249 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 TMEM99Q8N816 258 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 SAMD12Q8N8I0 201 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 DNAJA4Q8WW22 397 aaPredicted RBP13.13□□□□□ -0.31
USH1C-201ENST00000005226 HCAR1Q9BXC0 346 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 ABCG5Q9H222 651 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 SYNPO2LQ9H987 977 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 ISYNA1Q9NPH2 558 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 TAS2R7Q9NYW3 318 aa13.13□□□□□ -0.31
USH1C-201ENST00000005226 TNFRSF10DQ9UBN6 386 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms