RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PCTPQ9UKL6 214 aa17.52■□□□□ 0.4
CLN3-262ENST00000637699 ROS1P08922 2347 aa17.52■□□□□ 0.39
CLN3-262ENST00000637699 H0YC42 278 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 C16orf97H3BN30 126 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 TSPAN2O60636 221 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 ABCB7O75027 752 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 CNOT4O95628 575 aaKnown RBP17.51■□□□□ 0.39
CLN3-262ENST00000637699 PEPDP12955 493 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 IL12BP29460 328 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 TPD52P55327 224 aaPredicted RBP17.51■□□□□ 0.39
CLN3-262ENST00000637699 EFR3AQ14156 821 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 TRADDQ15628 312 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 C10orf62Q5T681 223 aaPredicted RBP17.51■□□□□ 0.39
CLN3-262ENST00000637699 FAM219BQ5XKK7 198 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 C20orf204Q6ZNR8 217 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 LARP4Q71RC2 724 aaKnown RBP eCLIP17.51■□□□□ 0.39
CLN3-262ENST00000637699 HEATR5AQ86XA9 2040 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 CCDC116Q8IYX3 515 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 OR4K17Q8NGC6 315 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 KAT2AQ92830 837 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 ZNF845Q96IR2 970 aaPredicted RBP17.51■□□□□ 0.39
CLN3-262ENST00000637699 FAIM2Q9BWQ8 316 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 ELOVL5Q9NYP7 299 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 ADAM21Q9UKJ8 722 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 UTS2RQ9UKP6 389 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 ATRQ13535 2644 aa17.51■□□□□ 0.39
CLN3-262ENST00000637699 ANK3Q12955 4377 aaKnown RBP17.5■□□□□ 0.39
CLN3-262ENST00000637699 ESRRBO95718 433 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 PDYNP01213 254 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 ALDOAP04075 364 aaKnown RBP17.5■□□□□ 0.39
CLN3-262ENST00000637699 CT45A8P0DMV1 189 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 CT45A9P0DMV2 189 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 PTH2RP49190 550 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 SERPINB8P50452 374 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 DSCR4P56555 118 aaPredicted RBP17.5■□□□□ 0.39
CLN3-262ENST00000637699 CT45A2Q5DJT8 189 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 ZNF628Q5EBL2 1059 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 C22orf34Q6ZV56 151 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 RPS27LQ71UM5 84 aaKnown RBP17.5■□□□□ 0.39
CLN3-262ENST00000637699 MEIOBQ8N635 442 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 C1orf52Q8N6N3 182 aaKnown RBP17.5■□□□□ 0.39
CLN3-262ENST00000637699 ZNF610Q8N9Z0 462 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 SELENOMQ8WWX9 145 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 EFHD2Q96C19 240 aaPredicted RBP17.5■□□□□ 0.39
CLN3-262ENST00000637699 MARK4Q96L34 752 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 BTBD9Q96Q07 612 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 REPIN1Q9BWE0 567 aaKnown RBP17.5■□□□□ 0.39
CLN3-262ENST00000637699 DSN1Q9H410 356 aa17.5■□□□□ 0.39
CLN3-262ENST00000637699 PPP6CO00743 305 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 CGAP01215 116 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 LOXP28300 417 aaPredicted RBP17.49■□□□□ 0.39
CLN3-262ENST00000637699 SUCLG1P53597 346 aaKnown RBP17.49■□□□□ 0.39
CLN3-262ENST00000637699 GAS1P54826 345 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 CLDN15P56746 228 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 CAV1Q03135 178 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 RAET1LQ5VY80 246 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 NPSR1Q6W5P4 371 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 PLEKHM3Q6ZWE6 761 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 CXXC5Q7LFL8 322 aaKnown RBP17.49■□□□□ 0.39
CLN3-262ENST00000637699 GBP7Q8N8V2 638 aaPredicted RBP17.49■□□□□ 0.39
CLN3-262ENST00000637699 HBEGFQ99075 208 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 PINK1Q9BXM7 581 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 GSX2Q9BZM3 304 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 KLHL4Q9C0H6 718 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 PPP4R1LQ9P1A2 415 aa17.49■□□□□ 0.39
CLN3-262ENST00000637699 UTP11Q9Y3A2 253 aaKnown RBP17.49■□□□□ 0.39
CLN3-262ENST00000637699 STX16-NPEPL1H3BU86 382 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 STX16O14662 325 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 SEC14L5O43304 696 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 EMC8O43402 210 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 SCO2O43819 266 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 SMIM24O75264 130 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 BCAS2O75934 225 aaPredicted RBP17.48■□□□□ 0.39
CLN3-262ENST00000637699 TSPAN8P19075 237 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 HK1P19367 917 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 PNLIPRP2P54317 469 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 EEFSECP57772 596 aaKnown RBP17.48■□□□□ 0.39
CLN3-262ENST00000637699 GUCY2DQ02846 1103 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 ERCC6LQ2NKX8 1250 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 GGTA1PQ4G0N0 100 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 LETMD1Q6P1Q0 360 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 ZDHHC24Q6UX98 284 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 ZNF572Q7Z3I7 529 aaPredicted RBP17.48■□□□□ 0.39
CLN3-262ENST00000637699 SLC44A2Q8IWA5 706 aaPredicted RBP17.48■□□□□ 0.39
CLN3-262ENST00000637699 OR4N2Q8NGD1 307 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 OR5M1Q8NGP8 315 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 OR9A2Q8NGT5 310 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 SPATA3Q8NHX4 192 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 FNDC9Q8TBE3 224 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 ZNF675Q8TD23 568 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 VSTM2LQ96N03 204 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 FOLH1BQ9HBA9 442 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 ZNF337Q9Y3M9 751 aa17.48■□□□□ 0.39
CLN3-262ENST00000637699 USF3Q68DE3 2245 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 TNFRSF21O75509 655 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 RBP1P09455 135 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 CD8BP10966 210 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 TBXA2RP21731 343 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 CDH13P55290 713 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 TRA2BP62995 288 aaKnown RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms