RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ATCAYQ86WG3 371 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 FAM129CQ86XR2 697 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 ZNF683Q8IZ20 524 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 TCTE3Q8IZS6 198 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 ZNF527Q8NB42 609 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 TMEM163Q8TC26 289 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 GLYATL1Q969I3 302 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 SGTBQ96EQ0 304 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 CD180Q99467 661 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 DDOQ99489 341 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.41□□□□□ -0.74
CLN3-244ENST00000636147 MIXL1Q9H2W2 232 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 TAS2R3Q9NYW6 316 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 LOC100509620A0A075B734 347 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 RP2O75695 350 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 IMPA1P29218 277 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 LIM2P55344 173 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 EXOSC2Q13868 293 aaKnown RBP10.41□□□□□ -0.74
CLN3-244ENST00000636147 CDKL4Q5MAI5 379 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 HES5Q5TA89 166 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 FAM122CQ6P4D5 195 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 NXPE4Q6UWF7 544 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 TMEM107Q6UX40 140 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 LRRN1Q6UXK5 716 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 OR6T1Q8NGN1 323 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 ACOT12Q8WYK0 555 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 RGMAQ96B86 450 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 SDHCQ99643 169 aaPredicted RBP10.41□□□□□ -0.74
CLN3-244ENST00000636147 C1GALT1Q9NS00 363 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 GNG8Q9UK08 70 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 EXO1Q9UQ84 846 aaKnown RBP10.41□□□□□ -0.74
CLN3-244ENST00000636147 MIA3Q5JRA6 1907 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 TEX51A0A1B0GUA7 166 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 H7C2Y5 167 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 PSMD9O00233 223 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 SOCS6O14544 535 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 RASGRP1O95267 797 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 RAF1P04049 648 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 TMEM44Q2T9K0 475 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 FAM198BQ6UWH4 519 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 RSPO2Q6UXX9 243 aaPredicted RBP10.41□□□□□ -0.74
CLN3-244ENST00000636147 HSD11B1LQ7Z5J1 315 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 ZER1Q7Z7L7 766 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 SIAH3Q8IW03 269 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 LINC00471Q8N535 108 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 KCT2Q8NC54 265 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 OR8S1Q8NH09 359 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 ANGPTL6Q8NI99 470 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 ZCCHC10Q8TBK6 192 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 PXYLP1Q8TE99 480 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 CHFRQ96EP1 664 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 ZSWIM3Q96MP5 696 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 KLHL31Q9H511 634 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 XKR8Q9H6D3 395 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 BRF2Q9HAW0 419 aa10.41□□□□□ -0.74
CLN3-244ENST00000636147 IFNGP01579 166 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 HLA-DQA2P01906 255 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 GALTP07902 379 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 ZNF806P0C7X5 589 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 CD22P20273 847 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 GBX2P52951 348 aaPredicted RBP10.4□□□□□ -0.74
CLN3-244ENST00000636147 SNRPGP62308 76 aaKnown RBP10.4□□□□□ -0.74
CLN3-244ENST00000636147 ID2Q02363 134 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 ST8SIA2Q92186 375 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 RBPMSQ93062 196 aaKnown RBP10.4□□□□□ -0.74
CLN3-244ENST00000636147 MRPL48Q96GC5 212 aaKnown RBP10.4□□□□□ -0.74
CLN3-244ENST00000636147 SCLYQ96I15 445 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 SLX1AQ9BQ83 275 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 POLDIP3Q9BY77 421 aaKnown RBP10.4□□□□□ -0.74
CLN3-244ENST00000636147 GSX2Q9BZM3 304 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 COPS3Q9UNS2 423 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 A0A1B0GVT2 93 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 HEPACAM2A8MVW5 462 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 FZD7O75084 574 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 ARL6IP5O75915 188 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 CSNK2A2P19784 350 aaPredicted RBP10.4□□□□□ -0.74
CLN3-244ENST00000636147 GRPRP30550 384 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 MNDAP41218 407 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 FGL2Q14314 439 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 STK11Q15831 433 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 GPR155Q7Z3F1 870 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 LRRC28Q86X40 367 aaPredicted RBP10.4□□□□□ -0.74
CLN3-244ENST00000636147 ADGRF3Q8IZF5 1079 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 FBLIM1Q8WUP2 373 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 ABCG4Q9H172 646 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 TCF7L1Q9HCS4 588 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 RCE1Q9Y256 329 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 NUBP2Q9Y5Y2 271 aa10.4□□□□□ -0.74
CLN3-244ENST00000636147 TRIP12Q14669 1992 aaPredicted RBP10.4□□□□□ -0.74
CLN3-244ENST00000636147 H0YIV9 168 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 NDUFV2P19404 249 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 PTPN6P29350 595 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 FAUP35544 74 aaKnown RBP10.4□□□□□ -0.75
CLN3-244ENST00000636147 CCR8P51685 355 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 CLDN20P56880 219 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 CAMK1Q14012 370 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 OPCMLQ14982 345 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 COL28A1Q2UY09 1125 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 C3orf38Q5JPI3 329 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 CBARPQ8N350 705 aaPredicted RBP10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms