RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 FAM111AQ96PZ2 611 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 GAL3ST4Q96RP7 486 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 PKP4Q99569 1192 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 SH3GL2Q99962 352 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 PLK3Q9H4B4 646 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 MRM3Q9HC36 420 aaKnown RBP3.95□□□□□ -1.78
LINC00540-201ENST00000611481 MAGEE1Q9HCI5 957 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 SLC40A1Q9NP59 571 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 FANCFQ9NPI8 374 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 OLFML3Q9NRN5 406 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 AGPAT3Q9NRZ7 376 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 CISHQ9NSE2 258 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 ARL8BQ9NVJ2 186 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 KIAA1456Q9P272 454 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 CRNNQ9UBG3 495 aaPredicted RBP3.95□□□□□ -1.78
LINC00540-201ENST00000611481 LAMP5Q9UJQ1 280 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 MFHAS1Q9Y4C4 1052 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 PCDHGB1Q9Y5G3 927 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 CLDN16Q9Y5I7 305 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 SCN2AQ99250 2005 aa3.95□□□□□ -1.78
LINC00540-201ENST00000611481 MAP2K7O14733 419 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 HCRTR2O43614 444 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 BUB1O43683 1085 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 PFKFB2O60825 505 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 PDE9AO76083 593 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 LETM1O95202 739 aaPredicted RBP3.94□□□□□ -1.78
LINC00540-201ENST00000611481 BMP10O95393 424 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 SERPINA7P05543 415 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 SP1P08047 785 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 CCDC159P0C7I6 412 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 FERP16591 822 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 CTPS1P17812 591 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 PRPH2P23942 346 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 TEAD1P28347 426 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 CASQ1P31415 396 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 SOAT1P35610 550 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 PRKCIP41743 596 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 ACAA2P42765 397 aaKnown RBP3.94□□□□□ -1.78
LINC00540-201ENST00000611481 ASCL1P50553 236 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 CASP9P55211 416 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 KCNJ10P78508 379 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 DEUP1Q05D60 604 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 NME3Q13232 169 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 EIF4EBP2Q13542 120 aaPredicted RBP3.94□□□□□ -1.78
LINC00540-201ENST00000611481 IL13RA2Q14627 380 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 MESDQ14696 234 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 PTGR1Q14914 329 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 PDK1Q15118 436 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 CNGA3Q16281 694 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 AP5B1Q2VPB7 878 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 PCGF3Q3KNV8 242 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 VAX1Q5SQQ9 334 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 GRHL2Q6ISB3 625 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 B3GNT6Q6ZMB0 384 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 CFAP77Q6ZQR2 320 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 HSD11B1LQ7Z5J1 315 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 CAMK1DQ8IU85 385 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 KLHL7Q8IXQ5 586 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 TMEM178AQ8NBL3 297 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 RELL2Q8NC24 303 aaPredicted RBP3.94□□□□□ -1.78
LINC00540-201ENST00000611481 OR52L2PQ8NGH6 319 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 OR5M9Q8NGP3 310 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 FAM216AQ8WUB2 273 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 SLC35F5Q8WV83 523 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 SLC13A3Q8WWT9 602 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 SMPDL3BQ92485 455 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 C8orf44Q96CB5 159 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 DNAJC19Q96DA6 116 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 CXorf40BQ96DE9 158 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 DTD2Q96FN9 168 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 LINC00615Q96LM1 132 aaPredicted RBP3.94□□□□□ -1.78
LINC00540-201ENST00000611481 TTYH2Q9BSA4 534 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 KRTAP4-4Q9BYR3 166 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 ANKRD10Q9NXR5 420 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 HAO2Q9NYQ3 351 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 CNIH4Q9P003 139 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 VPS18Q9P253 973 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 CD84Q9UIB8 345 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 PCDHA7Q9UN72 937 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 EIF3LQ9Y262 564 aaKnown RBP3.94□□□□□ -1.78
LINC00540-201ENST00000611481 SRPRBQ9Y5M8 271 aaKnown RBP3.94□□□□□ -1.78
LINC00540-201ENST00000611481 SIRT4Q9Y6E7 314 aaPredicted RBP3.94□□□□□ -1.78
LINC00540-201ENST00000611481 ROS1P08922 2347 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 CPAMD8Q8IZJ3 1885 aa3.94□□□□□ -1.78
LINC00540-201ENST00000611481 NOTCH3Q9UM47 2321 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 NSG1A0A0A6YYJ2 146 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 TMEM89A2RUT3 159 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 OR5K3A6NET4 321 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 M0QYV0 167 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 GAPDHSO14556 408 aaPredicted RBP3.93□□□□□ -1.78
LINC00540-201ENST00000611481 RRHO14718 337 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 TFECO14948 347 aaPredicted RBP3.93□□□□□ -1.78
LINC00540-201ENST00000611481 RIPK2O43353 540 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 LMX1BO60663 402 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 SOD1P00441 154 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 GBAP04062 536 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 HOXB5P09067 269 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 PKMP14618 531 aaKnown RBP3.93□□□□□ -1.78
LINC00540-201ENST00000611481 CDH3P22223 829 aa3.93□□□□□ -1.78
LINC00540-201ENST00000611481 IGFBP5P24593 272 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms