RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 GTF2IRD2Q86UP8 949 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 PRR22Q8IZ63 422 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 CNPY4Q8N129 248 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 SPATA6LQ8N4H0 392 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 ADCY4Q8NFM4 1077 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 WDR20Q8TBZ3 569 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 ZNF675Q8TD23 568 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 SLC44A1Q8WWI5 657 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 STARD4Q96DR4 205 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 C16orf45Q96MC5 204 aaPredicted RBP5.69□□□□□ -1.5
CUX1-220ENST00000607092 WFIKKN1Q96NZ8 548 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 BTBD9Q96Q07 612 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 FRG2BQ96QU4 278 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 PIGQQ9BRB3 760 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 TACO1Q9BSH4 297 aaKnown RBP5.69□□□□□ -1.5
CUX1-220ENST00000607092 NTMT1Q9BV86 223 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 SORBS1Q9BX66 1292 aaKnown RBP5.69□□□□□ -1.5
CUX1-220ENST00000607092 ZNF717Q9BY31 904 aaPredicted RBP5.69□□□□□ -1.5
CUX1-220ENST00000607092 ITPAQ9BY32 194 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 PRRG4Q9BZD6 226 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 BRINP2Q9C0B6 783 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 SAP130Q9H0E3 1048 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 L2HGDHQ9H9P8 463 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 CAB39LQ9H9S4 337 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 C3orf14Q9HBI5 128 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 KLHL28Q9NXS3 571 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 TAS2R9Q9NYW1 312 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 C6orf203Q9P0P8 240 aaPredicted RBP5.69□□□□□ -1.5
CUX1-220ENST00000607092 SENP1Q9P0U3 644 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 WHRNQ9P202 907 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 ABCG2Q9UNQ0 655 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 FREM3P0C091 2139 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 EML6Q6ZMW3 1958 aa5.69□□□□□ -1.5
CUX1-220ENST00000607092 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.68□□□□□ -1.55e-10■□□□□ 8.5
CUX1-220ENST00000607092 A0A1W2PPR1 153 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 TCRBV9S1A1TA0A576 114 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 FAM187AA6NFU0 413 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 TRIM64A6NGJ6 449 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 TRIM64BA6NI03 449 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 RNF212BA8MTL3 300 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 KDM4EB2RXH2 506 aaPredicted RBP5.68□□□□□ -1.5
CUX1-220ENST00000607092 UBXN8O00124 270 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 PGRMC2O15173 223 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 COQ9O75208 318 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 UGT2B11O75310 529 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 KLK1P06870 262 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 RBP1P09455 135 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 HSD3B1P14060 373 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 IL11P20809 199 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 GRK2P25098 689 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 HSD3B2P26439 372 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 CNTFP26441 200 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 MPIP34949 423 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 HEPACAMQ14CZ8 416 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 ZNHIT3Q15649 155 aaPredicted RBP5.68□□□□□ -1.5
CUX1-220ENST00000607092 SGCBQ16585 318 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 PRICKLE4Q2TBC4 344 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 GGTA1PQ4G0N0 100 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 PDSS1Q5T2R2 415 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 RAET1LQ5VY80 246 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 ADAM5Q6NVV9 412 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 ZNF704Q6ZNC4 412 aaPredicted RBP5.68□□□□□ -1.5
CUX1-220ENST00000607092 BEND4Q6ZU67 534 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 LARP4Q71RC2 724 aaKnown RBP eCLIP5.68□□□□□ -1.59e-6■■■■□ 21.5
CUX1-220ENST00000607092 KLHL7Q8IXQ5 586 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 CCDC116Q8IYX3 515 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 SLC35F6Q8N357 371 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 METTL4Q8N3J2 472 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 WDSUB1Q8N9V3 476 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 STEAP2Q8NFT2 490 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 OR6K3Q8NGY3 331 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 PPP1R14CQ8TAE6 165 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 RDH11Q8TC12 318 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 NANOS1Q8WY41 292 aaKnown RBP5.68□□□□□ -1.5
CUX1-220ENST00000607092 KLHL29Q96CT2 875 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 GMPPAQ96IJ6 420 aaPredicted RBP5.68□□□□□ -1.5
CUX1-220ENST00000607092 NODALQ96S42 347 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 ADOQ96SZ5 270 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 HDHD5Q9BXW7 423 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 IQCGQ9H095 443 aaKnown RBP5.68□□□□□ -1.5
CUX1-220ENST00000607092 ESRP2Q9H6T0 727 aaKnown RBP5.68□□□□□ -1.5
CUX1-220ENST00000607092 RNF122Q9H9V4 155 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 BRF2Q9HAW0 419 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 LRTM1Q9HBL6 345 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 SAYSD1Q9NPB0 183 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 PFDN4Q9NQP4 134 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 FAIMQ9NVQ4 179 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 MAT2BQ9NZL9 334 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 PPP4R1LQ9P1A2 415 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 ZNF639Q9UID6 485 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 MCTS1Q9ULC4 181 aaKnown RBP5.68□□□□□ -1.5
CUX1-220ENST00000607092 SNX6Q9UNH7 406 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 GPR52Q9Y2T5 361 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 GPR55Q9Y2T6 319 aaPredicted RBP5.68□□□□□ -1.5
CUX1-220ENST00000607092 OR10H1Q9Y4A9 318 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 PCDHA9Q9Y5H5 950 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 SAR1BQ9Y6B6 198 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 AP4B1Q9Y6B7 739 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 DSCAMO60469 2012 aa5.68□□□□□ -1.5
CUX1-220ENST00000607092 MGAM2Q2M2H8 2515 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms