RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 Q9N2J8 555 aa12.69□□□□□ -0.38
UPF1-205ENST00000598209 KLRF1Q9NZS2 232 aa12.69□□□□□ -0.38
UPF1-205ENST00000598209 B4GALT7Q9UBV7 327 aa12.69□□□□□ -0.38
UPF1-205ENST00000598209 TINAGQ9UJW2 476 aa12.69□□□□□ -0.38
UPF1-205ENST00000598209 CBLCQ9ULV8 474 aa12.69□□□□□ -0.38
UPF1-205ENST00000598209 LIPGQ9Y5X9 500 aa12.69□□□□□ -0.38
UPF1-205ENST00000598209 ICE1Q9Y2F5 2266 aa12.69□□□□□ -0.38
UPF1-205ENST00000598209 LRRK2Q5S007 2527 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 WIPF3A6NGB9 483 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 PRAMEF25A6NGN4 478 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 CCL21O00585 134 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 ANKRD28O15084 1053 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 ICOSLGO75144 302 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 IGHG3P01860 377 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 GABRA3P34903 492 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 PTGDSP41222 190 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 PRR5P85299 388 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 DECR1Q16698 335 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 FNDC7Q5VTL7 733 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 OR4F3Q6IEY1 312 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 SLC30A6Q6NXT4 461 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 TRILQ7L0X0 811 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 MAVSQ7Z434 540 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 SPATA19Q7Z5L4 167 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 CDRT4Q8N9R6 151 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 HOXB13Q92826 284 aaPredicted RBP12.68□□□□□ -0.38
UPF1-205ENST00000598209 FAM120BQ96EK7 910 aaKnown RBP12.68□□□□□ -0.38
UPF1-205ENST00000598209 ACBD3Q9H3P7 528 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 LDAHQ9H6V9 325 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 GALNT9Q9HCQ5 603 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 ZCCHC3Q9NUD5 404 aaKnown RBP12.68□□□□□ -0.38
UPF1-205ENST00000598209 INTS9Q9NV88 658 aaKnown RBP12.68□□□□□ -0.38
UPF1-205ENST00000598209 SNX8Q9Y5X2 465 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 PCNX1Q96RV3 2341 aa12.68□□□□□ -0.38
UPF1-205ENST00000598209 NCOA6Q14686 2063 aaPredicted RBP12.67□□□□□ -0.38
UPF1-205ENST00000598209 GXYLT2A0PJZ3 443 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 C2orf72A6NCS6 295 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 PRRG2O14669 202 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 GNB5O14775 395 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 CFLARO15519 480 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 NKX2-2O95096 273 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 ACP2P11117 423 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 CYP4B1P13584 511 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 GDF1P27539 372 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 MAP3K8P41279 467 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 WNT3P56703 355 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 MRPS22P82650 360 aaKnown RBP12.67□□□□□ -0.38
UPF1-205ENST00000598209 SNTA1Q13424 505 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 VPS26BQ4G0F5 336 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 SLC9B1Q4ZJI4 515 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 NXNQ6DKJ4 435 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 MFSD12Q6NUT3 480 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 ANGPTL8Q6UXH0 198 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 CD163Q86VB7 1156 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 PSMA8Q8TAA3 256 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 FBXO30Q8TB52 745 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 FAM57AQ8TBR7 257 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 GPR151Q8TDV0 419 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 PIK3R3Q92569 461 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 SLC9A6Q92581 669 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 MAELQ96JY0 434 aaKnown RBP12.67□□□□□ -0.38
UPF1-205ENST00000598209 C7orf26Q96N11 449 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 GNRHR2Q96P88 292 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 PSMG3-AS1Q96PY0 264 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 EXO5Q9H790 373 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 CXorf36Q9H7Y0 433 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 NEUROD4Q9HD90 331 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 SLCO1B3Q9NPD5 702 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 AIG1Q9NVV5 245 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 QPCTLQ9NXS2 382 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 SUCOQ9UBS9 1254 aaKnown RBP12.67□□□□□ -0.38
UPF1-205ENST00000598209 MRTO4Q9UKD2 239 aaKnown RBP12.67□□□□□ -0.38
UPF1-205ENST00000598209 PHF3Q92576 2039 aaKnown RBP12.67□□□□□ -0.38
UPF1-205ENST00000598209 PCNX3Q9H6A9 2034 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 PTPN13Q12923 2485 aa12.67□□□□□ -0.38
UPF1-205ENST00000598209 TRGV5A0A0B4J1U4 118 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 A0A1B0GVC2 190 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 NPIPA2E9PIF3 369 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 NPIPA3F8WFD2 350 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 AQP7O14520 342 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 ZNF195O14628 629 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 SNPHO15079 494 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 SUSD5O60279 629 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 HCN1O60741 890 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 ZG16O60844 167 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 KCNH1O95259 989 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 IL33O95760 270 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 TPOP07202 933 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 ESRRAP11474 423 aaPredicted RBP12.66□□□□□ -0.38
UPF1-205ENST00000598209 ELAVL4P26378 380 aaKnown RBP12.66□□□□□ -0.38
UPF1-205ENST00000598209 KIR3DL1P43629 444 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 RFX3P48380 749 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 CCT3P49368 545 aaKnown RBP12.66□□□□□ -0.38
UPF1-205ENST00000598209 MAN2A2P49641 1150 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 PRIM2P49643 509 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 CLNS1AP54105 237 aaKnown RBP12.66□□□□□ -0.38
UPF1-205ENST00000598209 PSMD4P55036 377 aaKnown RBP12.66□□□□□ -0.38
UPF1-205ENST00000598209 NME5P56597 212 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 HBA1P69905 142 aa12.66□□□□□ -0.38
UPF1-205ENST00000598209 SPDYE7PQ495Y7 208 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms