RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 POU6F2P78424 691 aaPredicted RBP13.23□□□□□ -0.29
LIG3-205ENST00000585941 ST3GAL3Q11203 375 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 ILKQ13418 452 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 PIN1Q13526 163 aaPredicted RBP13.23□□□□□ -0.29
LIG3-205ENST00000585941 SERTAD2Q14140 314 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 YOD1Q5VVQ6 348 aaPredicted RBP13.23□□□□□ -0.29
LIG3-205ENST00000585941 NKAIN2Q5VXU1 208 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 CWF19L1Q69YN2 538 aaKnown RBP13.23□□□□□ -0.29
LIG3-205ENST00000585941 KLHL17Q6TDP4 642 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 CD300LDQ6UXZ3 194 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 OLIG3Q7RTU3 272 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 COMTD1Q86VU5 262 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 VRK2Q86Y07 508 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 ENTHD1Q8IYW4 607 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 D2HGDHQ8N465 521 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 FAM81AQ8TBF8 368 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 SLC7A13Q8TCU3 470 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 GAB3Q8WWW8 586 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 RIT1Q92963 219 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 SLC38A4Q969I6 547 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 GTPBP3Q969Y2 492 aaKnown RBP13.23□□□□□ -0.29
LIG3-205ENST00000585941 DGAT2Q96PD7 388 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 PLCXD1Q9NUJ7 323 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 IMPAD1Q9NX62 359 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 MKLN1Q9UL63 735 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 CDC14AQ9UNH5 594 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 ZAR1LA6NP61 321 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 TOX3O15405 576 aaPredicted RBP13.22□□□□□ -0.29
LIG3-205ENST00000585941 LAMTOR5O43504 91 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 NME6O75414 186 aaPredicted RBP13.22□□□□□ -0.29
LIG3-205ENST00000585941 OR2B3O76000 313 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 MED26O95402 600 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 GIMD1P0DJR0 217 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 SPTBP11277 2137 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 RPS4Y1P22090 263 aaKnown RBP13.22□□□□□ -0.29
LIG3-205ENST00000585941 STT3AP46977 705 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 RGS8P57771 180 aaPredicted RBP13.22□□□□□ -0.29
LIG3-205ENST00000585941 ZNF155Q12901 538 aaPredicted RBP13.22□□□□□ -0.29
LIG3-205ENST00000585941 PMS2P3Q13401 168 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 RAB39AQ14964 217 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 TRAM2Q15035 370 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 PTGES3Q15185 160 aaKnown RBP13.22□□□□□ -0.29
LIG3-205ENST00000585941 SEC23BQ15437 767 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 NEDD8Q15843 81 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 TSSK4Q6SA08 328 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 WDR53Q7Z5U6 358 aaPredicted RBP13.22□□□□□ -0.29
LIG3-205ENST00000585941 CCDC71Q8IV32 467 aaPredicted RBP13.22□□□□□ -0.29
LIG3-205ENST00000585941 SVOPQ8N4V2 548 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 OR51Q1Q8NH59 317 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 RHOXF1Q8NHV9 184 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 GPR151Q8TDV0 419 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 SLC41A2Q96JW4 573 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 WFDC6Q9BQY6 131 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 LMF2Q9BU23 707 aaKnown RBP13.22□□□□□ -0.29
LIG3-205ENST00000585941 ALOXE3Q9BYJ1 711 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 QRSL1Q9H0R6 528 aaKnown RBP13.22□□□□□ -0.29
LIG3-205ENST00000585941 FANCEQ9HB96 536 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 CUTCQ9NTM9 273 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 TMEM9Q9P0T7 183 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 FTSJ1Q9UET6 329 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 KLHL3Q9UH77 587 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 GMEB2Q9UKD1 530 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 RNF6Q9Y252 685 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 MMACHCQ9Y4U1 282 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 PI4KAP42356 2102 aa13.22□□□□□ -0.29
LIG3-205ENST00000585941 PTGES3LE9PB15 166 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 AHCYL1O43865 530 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 KIAA0513O60268 411 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 PRAMEF2O60811 474 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 FAM20BO75063 409 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 WBP4O75554 376 aaKnown RBP13.21□□□□□ -0.29
LIG3-205ENST00000585941 ZIC2O95409 532 aaPredicted RBP13.21□□□□□ -0.29
LIG3-205ENST00000585941 CBX7O95931 251 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 CT62P0C5K7 136 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 TDGF1P13385 188 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 POU2F1P14859 743 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 ITIH1P19827 911 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 GSTM3P21266 225 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 CD1CP29017 333 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 EPHA8P29322 1005 aaPredicted RBP13.21□□□□□ -0.29
LIG3-205ENST00000585941 FMO3P31513 532 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 ALDH6A1Q02252 535 aaKnown RBP13.21□□□□□ -0.29
LIG3-205ENST00000585941 MVKQ03426 396 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 SIGLEC14Q08ET2 396 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 EXOSC7Q15024 291 aaKnown RBP13.21□□□□□ -0.29
LIG3-205ENST00000585941 SHBQ15464 509 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 NPTX1Q15818 432 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 ZSWIM7Q19AV6 140 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 PGBD2Q6P3X8 592 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 PODNL1Q6PEZ8 512 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 CLVS1Q8IUQ0 354 aaPredicted RBP13.21□□□□□ -0.29
LIG3-205ENST00000585941 GPR135Q8IZ08 494 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 SIMC1Q8NDZ2 872 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 OR52R1Q8NGF1 315 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 NMD3Q96D46 503 aaKnown RBP13.21□□□□□ -0.29
LIG3-205ENST00000585941 ZG16BQ96DA0 208 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 OR1F2PQ96R84 312 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 SPRTNQ9H040 489 aaPredicted RBP13.21□□□□□ -0.29
LIG3-205ENST00000585941 RASSF1Q9NS23 344 aa13.21□□□□□ -0.29
LIG3-205ENST00000585941 MAN2C1Q9NTJ4 1040 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms