RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 DHRS12A0PJE2 317 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 ST13P50502 369 aaKnown RBP23.24■■□□□ 1.31
SHMT1-207ENST00000580002 POU6F2P78424 691 aaPredicted RBP23.24■■□□□ 1.31
SHMT1-207ENST00000580002 DUSP7Q16829 419 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 CRB2Q5IJ48 1285 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 DESI1Q6ICB0 168 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 CBLL1Q75N03 491 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 C10orf67Q8IYJ2 551 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 PRR22Q8IZ63 422 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 IL22RA1Q8N6P7 574 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 STMN2Q93045 179 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 TPD52L3Q96J77 140 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 TRNT1Q96Q11 434 aaKnown RBP23.24■■□□□ 1.31
SHMT1-207ENST00000580002 ZNF700Q9H0M5 742 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 COPS7AQ9UBW8 275 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 PPIEQ9UNP9 301 aaKnown RBP23.24■■□□□ 1.31
SHMT1-207ENST00000580002 PADI2Q9Y2J8 665 aa23.24■■□□□ 1.31
SHMT1-207ENST00000580002 TRBV11-1A0A0K0K1C0 115 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 C2orf92A0A1B0GVN3 265 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 TPST1O60507 370 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 CYC1P08574 325 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 CRISP3P54108 245 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 RNF4P78317 190 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 ZNHIT3Q15649 155 aaPredicted RBP23.23■■□□□ 1.31
SHMT1-207ENST00000580002 TYW3Q6IPR3 259 aaKnown RBP23.23■■□□□ 1.31
SHMT1-207ENST00000580002 CHDHQ8NE62 594 aaPredicted RBP23.23■■□□□ 1.31
SHMT1-207ENST00000580002 C7orf57Q8NEG2 295 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 OR52E4Q8NGH9 312 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 ART5Q96L15 291 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 IMMP1LQ96LU5 166 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 BTBD9Q96Q07 612 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 WFDC6Q9BQY6 131 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 BTBD2Q9BX70 525 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 WWTR1Q9GZV5 400 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 KCNE5Q9UJ90 142 aa23.23■■□□□ 1.31
SHMT1-207ENST00000580002 TMEM200CA6NKL6 621 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 IQCJ-SCHIP1C9J366 451 aaPredicted RBP23.22■■□□□ 1.31
SHMT1-207ENST00000580002 ZNF354AO60765 605 aaPredicted RBP23.22■■□□□ 1.31
SHMT1-207ENST00000580002 MFN2O95140 757 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 PPICP45877 212 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 NR0B1P51843 470 aaKnown RBP23.22■■□□□ 1.31
SHMT1-207ENST00000580002 RIPK1Q13546 671 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 SSPNQ14714 243 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 RTP5Q14D33 572 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 GPR68Q15743 365 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 EIF3MQ7L2H7 374 aaKnown RBP23.22■■□□□ 1.31
SHMT1-207ENST00000580002 VASH2Q86V25 355 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 GPR32P1Q8NGA4 272 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 BCL2L10Q9HD36 194 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 CCM2LQ9NUG4 571 aaPredicted RBP23.22■■□□□ 1.31
SHMT1-207ENST00000580002 ANAPC2Q9UJX6 822 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 LIPT1Q9Y234 373 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 TMEM247A6NEH6 219 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 PRAMEF25A6NGN4 478 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 C21orf140B9A014 251 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 BTBD16Q32M84 506 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 INTS11Q5TA45 600 aaKnown RBP23.22■■□□□ 1.31
SHMT1-207ENST00000580002 IGF2-ASQ6U949 168 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 LRRC74BQ6ZQY2 392 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 VRK2Q86Y07 508 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 LILRA2Q8N149 483 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 BCORP1Q8N888 145 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 HSH2DQ96JZ2 352 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 RNF145Q96MT1 663 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 GPR87Q9BY21 358 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 ZNF350Q9GZX5 532 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 ZNF160Q9HCG1 818 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 OLAHQ9NV23 265 aa23.22■■□□□ 1.31
SHMT1-207ENST00000580002 GPC6Q9Y625 555 aaPredicted RBP23.22■■□□□ 1.31
SHMT1-207ENST00000580002 PIEZO1Q92508 2521 aa23.21■■□□□ 1.31
SHMT1-207ENST00000580002 CLDN24A6NM45 220 aa23.21■■□□□ 1.31
SHMT1-207ENST00000580002 TIPRLO75663 272 aa23.21■■□□□ 1.31
SHMT1-207ENST00000580002 DXOO77932 396 aaKnown RBP23.21■■□□□ 1.31
SHMT1-207ENST00000580002 BAG2O95816 211 aa23.21■■□□□ 1.31
SHMT1-207ENST00000580002 TRHRP34981 398 aaPredicted RBP23.21■■□□□ 1.31
SHMT1-207ENST00000580002 MAPK14Q16539 360 aa23.21■■□□□ 1.31
SHMT1-207ENST00000580002 ZNF441Q8N8Z8 693 aa23.21■■□□□ 1.31
SHMT1-207ENST00000580002 DUS3LQ96G46 650 aaKnown RBP23.21■■□□□ 1.31
SHMT1-207ENST00000580002 PYURFQ96I23 114 aa23.21■■□□□ 1.31
SHMT1-207ENST00000580002 LCORQ96JN0 433 aaPredicted RBP23.21■■□□□ 1.31
SHMT1-207ENST00000580002 CBLCQ9ULV8 474 aa23.21■■□□□ 1.31
SHMT1-207ENST00000580002 WDR45Q9Y484 360 aa23.21■■□□□ 1.31
SHMT1-207ENST00000580002 OR10H1Q9Y4A9 318 aa23.21■■□□□ 1.31
SHMT1-207ENST00000580002 AP4S1Q9Y587 144 aa23.21■■□□□ 1.31
SHMT1-207ENST00000580002 DSPPQ9NZW4 1301 aa23.2■■□□□ 1.31
SHMT1-207ENST00000580002 A0A0G2JPF8 293 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 HNRNPCL2B2RXH8 293 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 HNRNPCL3B7ZW38 293 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 PEX12O00623 359 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 EPPINO95925 133 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 AGR2O95994 175 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 CD63P08962 238 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 HNRNPCL4P0DMR1 293 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 CD247P20963 164 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 SLC7A1P30825 629 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 PIGAP37287 484 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 TXNL4AP83876 142 aaKnown RBP23.2■■□□□ 1.3
SHMT1-207ENST00000580002 Q0VFX4 171 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 HSDL2Q6YN16 418 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 SLC29A4Q7RTT9 530 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms