RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 EGFL7Q9UHF1 273 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 CBLCQ9ULV8 474 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 USP22Q9UPT9 525 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 OR10H1Q9Y4A9 318 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 A0A0G2JPF8 293 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 HNRNPCL2B2RXH8 293 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 HNRNPCL3B7ZW38 293 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 SERPINA7P05543 415 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 HNRNPCL4P0DMR1 293 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 MSX2P35548 267 aaPredicted RBP9.94□□□□□ -0.82
SS18-213ENST00000579640 PIGAP37287 484 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 PSMD4P55036 377 aaKnown RBP9.94□□□□□ -0.82
SS18-213ENST00000579640 POLE2P56282 527 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 CORO7P57737 925 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 FOXK2Q01167 660 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 MS4A2Q01362 244 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 ATP1A4Q13733 1029 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 ELOAQ14241 798 aaKnown RBP9.94□□□□□ -0.82
SS18-213ENST00000579640 FLOT2Q14254 428 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 SYPL1Q16563 259 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 DECR1Q16698 335 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 GPAT3Q53EU6 434 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 DCST2Q5T1A1 773 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 JMJD6Q6NYC1 403 aaPredicted RBP9.94□□□□□ -0.82
SS18-213ENST00000579640 KBTBD2Q8IY47 623 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 ANKFN1Q8N957 763 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 FIG4Q92562 907 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 PIK3R3Q92569 461 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 FAM162AQ96A26 154 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 LRGUKQ96M69 825 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 NSMCE2Q96MF7 247 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 G6PC3Q9BUM1 346 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 ZNF350Q9GZX5 532 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 NXF5Q9H1B4 397 aaKnown RBP9.94□□□□□ -0.82
SS18-213ENST00000579640 WDR70Q9NW82 654 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 KCNE3Q9Y6H6 103 aa9.94□□□□□ -0.82
SS18-213ENST00000579640 PRAMEF27A3QJZ7 478 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 CDC14CA4D256 554 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 AQP12BA6NM10 295 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 TLX3O43711 291 aaPredicted RBP9.93□□□□□ -0.82
SS18-213ENST00000579640 STX11O75558 287 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 KCNK2O95069 426 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 PGM3O95394 542 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 IFNA14P01570 189 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 ETS2P15036 469 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 LCN1P31025 176 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 KDELR2P33947 212 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 RRADP55042 308 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 NRG3P56975 720 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 PCBP3P57721 371 aaKnown RBP9.93□□□□□ -0.82
SS18-213ENST00000579640 MRPS22P82650 360 aaKnown RBP9.93□□□□□ -0.82
SS18-213ENST00000579640 FUT5Q11128 374 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 CHAF1BQ13112 559 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 MAPK11Q15759 364 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.93□□□□□ -0.82
SS18-213ENST00000579640 CRB2Q5IJ48 1285 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 DCAF10Q5QP82 559 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 AP1ARQ63HQ0 302 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 KRT73Q86Y46 540 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 AQP12AQ8IXF9 295 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 C10orf67Q8IYJ2 551 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 TAGAPQ8N103 731 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 SLC34A3Q8N130 599 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 EID3Q8N140 333 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 SLC15A4Q8N697 577 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 ZSCAN1Q8NBB4 408 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 FAM110BQ8TC76 370 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 RMND5BQ96G75 393 aaPredicted RBP9.93□□□□□ -0.82
SS18-213ENST00000579640 RNF145Q96MT1 663 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 ZNF607Q96SK3 696 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 SDF2Q99470 211 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 TREX2Q9BQ50 279 aaPredicted RBP9.93□□□□□ -0.82
SS18-213ENST00000579640 SPATA5L1Q9BVQ7 753 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 CCDC86Q9H6F5 360 aaKnown RBP9.93□□□□□ -0.82
SS18-213ENST00000579640 ANGPTL2Q9UKU9 493 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 GXYLT2A0PJZ3 443 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 KLK10O43240 276 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 PRKNO60260 465 aaPredicted RBP9.93□□□□□ -0.82
SS18-213ENST00000579640 SERPINB7O75635 380 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 H6PDO95479 791 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 CHRM4P08173 479 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 NCK1P16333 377 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 NAGAP17050 411 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 ATP6V1C1P21283 382 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 SOX11P35716 441 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 KRT20P35900 424 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 NR0B1P51843 470 aaKnown RBP9.93□□□□□ -0.82
SS18-213ENST00000579640 ACTR3P61158 418 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 AIMP2Q13155 320 aaKnown RBP9.93□□□□□ -0.82
SS18-213ENST00000579640 ARMC10Q8N2F6 343 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 BCORP1Q8N888 145 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 TMEM102Q8N9M5 508 aaPredicted RBP9.93□□□□□ -0.82
SS18-213ENST00000579640 GOLM1Q8NBJ4 401 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 SLC22A8Q8TCC7 542 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 RASSF5Q8WWW0 418 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 OIT3Q8WWZ8 545 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 CCNL2Q96S94 520 aaPredicted RBP9.93□□□□□ -0.82
SS18-213ENST00000579640 SAP130Q9H0E3 1048 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 SLC38A1Q9H2H9 487 aa9.93□□□□□ -0.82
SS18-213ENST00000579640 TRIM45Q9H8W5 580 aaPredicted RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms