RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 OR5H15A6NDH6 313 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 TMCO5BA8MYB1 307 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 F8VZ95 297 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 PHOX2AO14813 284 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 ATP9AO75110 1047 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 FRAT2O75474 233 aaPredicted RBP4.04□□□□□ -1.76
NUP88-213ENST00000576862 SURF6O75683 361 aaKnown RBP4.04□□□□□ -1.76
NUP88-213ENST00000576862 GLCEO94923 617 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 CASP3P42574 277 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 FHITP49789 147 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 ACTR1AP61163 376 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 C17orf67Q0P5P2 114 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 PEX6Q13608 980 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 NFE2L1Q14494 772 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 STK11Q15831 433 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 TMEM44Q2T9K0 475 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 TMUB2Q71RG4 321 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 CCDC80Q76M96 950 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 TUSC5Q8IXB3 177 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 PCNPQ8WW12 178 aaKnown RBP4.04□□□□□ -1.76
NUP88-213ENST00000576862 ITLN1Q8WWA0 313 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 GAL3ST1Q99999 423 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 RBM24Q9BX46 236 aaKnown RBP4.04□□□□□ -1.76
NUP88-213ENST00000576862 EHD1Q9H4M9 534 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 MARCH7Q9H992 704 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 NMUR1Q9HB89 426 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 UBE2TQ9NPD8 197 aaPredicted RBP4.04□□□□□ -1.76
NUP88-213ENST00000576862 GLRX2Q9NS18 164 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 AGRNO00468 2067 aa4.04□□□□□ -1.76
NUP88-213ENST00000576862 PARP4Q9UKK3 1724 aaKnown RBP4.04□□□□□ -1.76
NUP88-213ENST00000576862 ADAMTS9Q9P2N4 1935 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 ATP6AP2A0A1C7CYW4 349 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 CTAGE15A4D2H0 777 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 ANGPT2O15123 496 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 CETN3O15182 167 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 SYT7O43581 403 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 SH3BGRLO75368 114 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 ZNF254O75437 659 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 RAD51DO75771 328 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 MT-ND1P03886 318 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 S100A6P06703 90 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 ASGR1P07306 291 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 TPM1P09493 284 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 C8orf89P0DMQ9 161 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 CCNA2P20248 432 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 MX1P20591 662 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 GDI1P31150 447 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 HAND2P61296 217 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 GABPB1Q06547 395 aaPredicted RBP4.03□□□□□ -1.76
NUP88-213ENST00000576862 MFGE8Q08431 387 aaPredicted RBP4.03□□□□□ -1.76
NUP88-213ENST00000576862 RIPK1Q13546 671 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 CYLC2Q14093 348 aaPredicted RBP4.03□□□□□ -1.76
NUP88-213ENST00000576862 FASTKQ14296 549 aaKnown RBP4.03□□□□□ -1.76
NUP88-213ENST00000576862 CLPPQ16740 277 aaPredicted RBP4.03□□□□□ -1.76
NUP88-213ENST00000576862 ZNF506Q5JVG8 444 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 ZYG11AQ6WRX3 759 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 NUFIP2Q7Z417 695 aaKnown RBP4.03□□□□□ -1.76
NUP88-213ENST00000576862 CTAGE6Q86UF2 777 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 PEX5LQ8IYB4 626 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 ARL14Q8N4G2 192 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 OR8K3Q8NH51 312 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 CCDC110Q8TBZ0 833 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 ZPLD1Q8TCW7 415 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 GCOM2Q9BZD3 368 aaPredicted RBP4.03□□□□□ -1.76
NUP88-213ENST00000576862 ZNF350Q9GZX5 532 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 LIME1Q9H400 295 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 SLC35D1Q9NTN3 355 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 DNAJC17Q9NVM6 304 aaKnown RBP4.03□□□□□ -1.76
NUP88-213ENST00000576862 TMEM161AQ9NX61 479 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 NINJ2Q9NZG7 142 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 FETUBQ9UGM5 382 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 FAM153AQ9UHL3 310 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 ZNF107Q9UII5 783 aaPredicted RBP4.03□□□□□ -1.76
NUP88-213ENST00000576862 APPL1Q9UKG1 709 aa4.03□□□□□ -1.76
NUP88-213ENST00000576862 PALLDQ8WX93 1383 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 HCFC1P51610 2035 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 UMODL1Q5DID0 1318 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 USP42Q9H9J4 1324 aaKnown RBP4.02□□□□□ -1.77
NUP88-213ENST00000576862 IGLV3-10A0A075B6K4 115 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 LOC100653049A0A140TA62 436 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 A0A1B0GTH9 108 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 ZNF263O14978 683 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 POLR2DO15514 142 aaKnown RBP4.02□□□□□ -1.77
NUP88-213ENST00000576862 BCAS2O75934 225 aaPredicted RBP4.02□□□□□ -1.77
NUP88-213ENST00000576862 KRT34O76011 436 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 FGFR1OPO95684 399 aaKnown RBP4.02□□□□□ -1.77
NUP88-213ENST00000576862 S100A9P06702 114 aaKnown RBP4.02□□□□□ -1.77
NUP88-213ENST00000576862 FHP07954 510 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 SLC1A6P48664 564 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 GBX2P52951 348 aaPredicted RBP4.02□□□□□ -1.77
NUP88-213ENST00000576862 ST8SIA6P61647 398 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 SARNPP82979 210 aaKnown RBP4.02□□□□□ -1.77
NUP88-213ENST00000576862 ACKR1Q16570 336 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 CCDC152Q4G0S7 254 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 LINC00696Q6ZRV3 163 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 CYP4V2Q6ZWL3 525 aaPredicted RBP4.02□□□□□ -1.77
NUP88-213ENST00000576862 SH2D6Q7Z4S9 175 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 ASPGQ86U10 573 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 PDCL2Q8N4E4 241 aa4.02□□□□□ -1.77
NUP88-213ENST00000576862 C19orf60Q96EN9 201 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms