RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 LPAR4Q99677 370 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 PKP2Q99959 881 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 ITPAQ9BY32 194 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 FAM117AQ9C073 453 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 SLC38A1Q9H2H9 487 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 Q9N2J8 555 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 POLE3Q9NRF9 147 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 FARSAQ9Y285 508 aaKnown RBP12.7□□□□□ -0.38
CCDC40-209ENST00000573474 DTX4Q9Y2E6 619 aa12.7□□□□□ -0.38
CCDC40-209ENST00000573474 GPR55Q9Y2T6 319 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-209ENST00000573474 DSPPQ9NZW4 1301 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 STX11O75558 287 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 KCNK2O95069 426 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 SEMG1P04279 462 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 CT45A8P0DMV1 189 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 CT45A9P0DMV2 189 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 CD247P20963 164 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 DRD5P21918 477 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 CD82P27701 267 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 GCKP35557 465 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 SESN3P58005 492 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 RPS15P62841 145 aaKnown RBP12.69□□□□□ -0.38
CCDC40-209ENST00000573474 CT45A2Q5DJT8 189 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 HLA-DQA1Q5Y7H0 255 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 NPSR1Q6W5P4 371 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 FRRS1Q6ZNA5 592 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 SLC29A4Q7RTT9 530 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 OLIG3Q7RTU3 272 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 ERMP1Q7Z2K6 904 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 VTCN1Q7Z7D3 282 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 MARCH9Q86YJ5 346 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 LILRA2Q8N149 483 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 B3GNT7Q8NFL0 401 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 FAM110BQ8TC76 370 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 LRTOMTQ8WZ04 291 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 WDR77Q9BQA1 342 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-209ENST00000573474 GPR87Q9BY21 358 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 SEMA4CQ9C0C4 833 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 ZNF350Q9GZX5 532 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 SAP130Q9H0E3 1048 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 TRIM45Q9H8W5 580 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-209ENST00000573474 CACYBPQ9HB71 228 aaKnown RBP12.69□□□□□ -0.38
CCDC40-209ENST00000573474 DLL3Q9NYJ7 618 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 SEC14L3Q9UDX4 400 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 RIMS3Q9UJD0 308 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 BAG5Q9UL15 447 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 WDR45Q9Y484 360 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 GVINP1Q7Z2Y8 2422 aa12.69□□□□□ -0.38
CCDC40-209ENST00000573474 C2orf92A0A1B0GVN3 265 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 FRG2CA6NGY1 282 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 C21orf140B9A014 251 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 STMND1H3BQB6 276 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 TPST1O60507 370 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 FCMRO60667 390 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 RAD1O60671 282 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 ZIC2O95409 532 aaPredicted RBP12.68□□□□□ -0.38
CCDC40-209ENST00000573474 ALPPP05187 535 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 MMP11P24347 488 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 PIGAP37287 484 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 STAT5AP42229 794 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 KCNJ5P48544 419 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 KCNJ10P78508 379 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 EBPQ15125 230 aaKnown RBP12.68□□□□□ -0.38
CCDC40-209ENST00000573474 ATP6AP1Q15904 470 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 CYP27C1Q4G0S4 372 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 IFI44LQ53G44 452 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 CCNJQ5T5M9 372 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 FAM69BQ5VUD6 431 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 TYW3Q6IPR3 259 aaKnown RBP12.68□□□□□ -0.38
CCDC40-209ENST00000573474 ZDHHC21Q8IVQ6 265 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 ZNF619Q8N2I2 560 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 TMEM102Q8N9M5 508 aaPredicted RBP12.68□□□□□ -0.38
CCDC40-209ENST00000573474 SMYD1Q8NB12 490 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 SPPL2AQ8TCT8 520 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 ADIPOR1Q96A54 375 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 C8orf44Q96CB5 159 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 RMND5BQ96G75 393 aaPredicted RBP12.68□□□□□ -0.38
CCDC40-209ENST00000573474 VMP1Q96GC9 406 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 LCORQ96JN0 433 aaPredicted RBP12.68□□□□□ -0.38
CCDC40-209ENST00000573474 MESP1Q9BRJ9 268 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 G6PC3Q9BUM1 346 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 WWTR1Q9GZV5 400 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 ZNF700Q9H0M5 742 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 IL1RAPQ9NPH3 570 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 AGPAT4Q9NRZ5 378 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 TCFL5Q9UL49 500 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 MKLN1Q9UL63 735 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 CBLCQ9ULV8 474 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 ZNF232Q9UNY5 417 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 IFT52Q9Y366 437 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 OR10H1Q9Y4A9 318 aa12.68□□□□□ -0.38
CCDC40-209ENST00000573474 FAM186AA6NE01 2351 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 CASQ2O14958 399 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-209ENST00000573474 CLOCKO15516 846 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 KIAA0513O60268 411 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 DEAF1O75398 565 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-209ENST00000573474 SEC24DO94855 1032 aaPredicted RBP12.67□□□□□ -0.38
CCDC40-209ENST00000573474 LDLRP01130 860 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 MT-ND1P03886 318 aa12.67□□□□□ -0.38
CCDC40-209ENST00000573474 FABP3P05413 133 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms